ABSTRACT Understanding population structure and clarifying species boundaries are essential for the sustainable management of exploited marine species. Although genomic resources for shallow‐water taxa have expanded rapidly, open‐water species remain comparatively understudied. Here, we present a comprehensive genomic analysis of the white anglerfish ( Lophius piscatorius ), a commercially important species that occupies a wide depth range. We examined genetic structuring and verified species identity across its distribution range in the North Atlantic and Mediterranean. We combined whole‐genome sequencing of selected individuals with targeted SNP genotyping of 897 specimens from 35 locations. Our results support a panmictic or nearly panmictic population of white anglerfish throughout the Northeast Atlantic, consistent with earlier studies, here extended northward to about 68° N. We found no evidence of local adaptation or selection. Like earlier studies, we detected apparently misclassified specimens of the closely related black anglerfish ( L. budegassa ) and extensive hybridization with up to 20% hybrids in local samples from around the Celtic Sea and nearby waters. Most or all hybrids appear to be first generation (F1), with a few potential backcrossed individuals of less certain identification. Demographic analyses indicate a recent colonization of the North Atlantic, with black anglerfish diverging more recently and maintaining a smaller effective population size. These results underscore the value of integrating genomic tools into monitoring frameworks to improve species identification, delineate population units, and inform sustainable fisheries management.

Understanding changes in abundance and survival in Atlantic salmon populations requires knowledge of growth rates and age. Salmon are typically aged through scale reading, but such estimates are rarely validated against age-verified fish from the wild. Here, we present a unique dataset of scales from 254 PIT-tagged Atlantic salmon with known sea-age. In addition, the freshwater age is known for 81 of these fish, through genetic parent-offspring identification. This dataset was used to estimate precision and bias in age readings and back-calculated length, as estimated by three independent experienced salmon scale readers. Overall, readers had an accuracy of 97.1% for sea-age and 71.7% for freshwater-age. For sea-age, scale reading was less accurate for salmon that had spent 2 or more years at sea than for salmon that had spent 1 year at sea. Freshwater age did however not affect scale reading accuracy. None of the scale readers erroneously misclassified freshwater- or sea-age with more than one year, and there was no significant pattern of misclassified ages to be under- or overestimate by the scale readers. Back-calculated smolt length was significantly different to length when measured as a smolt prior to seaward migration: it was shorter than the measured body-length for small smolts and longer for large smolts. This unique dataset, including the age-validated images of all scales, is now made openly available providing an important resource for training and testing salmon scale readers globally.

Inbreeding and the associated increase in homozygosity and potential accumulation of deleterious alleles may reduce fitness in a process known as inbreeding depression. Mechanisms to mitigate reproduction between close relatives, ranging from pre-mating mate choice to post-mating gamete selection, have evolved across taxa. In external fertilisers like Atlantic salmon (Salmo salar), where females have limited control over paternity, mechanisms of inbreeding avoidance can be expected to evolve at the gamete level. Philopatric Atlantic salmon may run the risk of breeding between relatives, particularly in small populations, and frequent escapes from aquaculture settings are augmenting the chances of adults from the same sibling cohort overlapping in the wild, raising potential ecological and sustainability concerns. Moreover, the presence of inbreeding avoidance mechanisms between full siblings in externally fertilising fish is currently untested. This study tested post-mating inbreeding avoidance mechanisms in domesticated Atlantic salmon. In a paired breeding design, we compared sperm motility parameters in sibling and non-sibling ovarian fluid, and assessed fertilisation and hatching success, growth rate and paternity in sperm competition trials between sibling and non-sibling males. Sperm activated in ovarian fluid of sibling females showed lower values of motility-related parameters and led to an average of 18% reduction in fertilisation rates in the resulting crosses. Furthermore, offspring from sibling crosses were smaller before the onset of sexual maturation. However, we found no difference in survival rates between sibling and non-sibling cross offspring. Besides, when sperm from sibling and non-sibling males were competing simultaneously for the same egg batch, we found no influence of this on paternity. Our findings reveal the presence of post-mating inbreeding avoidance at the gamete level in Atlantic salmon, but its effects are limited in competitive scenarios. Our results have implications for salmonid conservation and aquaculture, where small natural or closed domestic strains may both display a degree of inbreeding. Mating between escaped domestic and wild salmonids could favour admixed over wild or feral crosses if an inbreeding avoidance mechanism is present; although this remains to be tested in more outbred crosses.

Triploidization is currently the preferred method to induce sterility in finfish aquaculture, to improve production and mitigate the effects of escapees interbreeding with wild conspecifics. However, triploid Atlantic salmon (Salmo salar) occasionally exhibit poor performance and welfare compared to diploids, the reasons for which are not fully understood. Having previously identified genetic aberrations among supposedly triploid salmon produced using a hydrostatic pressure-shock, we hypothesized that unexpected drops in hydrostatic pressure could induce 'failed-triploidy' and explain poor performance and welfare. To test this, we subjected Atlantic salmon eggs from three half-sibling families to five hydrostatic pressure treatments: a diploid control (0 PSI), three suboptimal pressures, 44.82, 51.71, 58.61 MPa (6500, 7500, and 8500 PSI), and a triploid control 65.50 MPa (9500 PSI). We monitored their growth and welfare throughout a 2.5-year production cycle and x-rayed a subsample of fish at harvest. Fish performance and welfare were primarily driven by ploidy and family effects, with differences among groups becoming evident after seawater transfer. Fish from certain half-sibling families performed particularly poorly as triploids, either through high mortality, poor growth and welfare, or a higher incidence and severity of vertebral deformities. There was limited evidence for sub-optimal pressure treatments themselves causing growth and welfare concerns. We conclude that, although sub-optimal pressure treatments can increase the number of non-viable offspring caused by inheritance aberrations, the performance of surviving fish is dictated by an interaction between ploidy and family effects. Selective breeding tailored to the triploid state therefore has the potential to improve triploid performance.

The architecture underpinning genomic divergence is still a largely uncharted territory and likely case-dependent. Here, we investigated genome-wide variation in Ballan wrasse, a northeastern Atlantic fish species that displays two sympatric colour morphs, spotty and plain, that have been suggested to represent subspecies. We produced a chromosome-level reference genome and thereafter investigated genomic divergence among 152 individuals including both morphs, from two localities in Spain and Norway each and one in France. Differences between morphs dominated in Spain in accordance with sympatric divergence, whereas in Norway allopatric differentiation was prominent and repeated genomic signals of local divergence were found. Chromosomes had large low-recombining areas shared across all populations. Within the Spanish morphs, these areas contained large islands of divergence, totalling ~11% of the genome, and showed high morph specificity and strong selection. The same regions showed frequent admixture in the French morphs and no differentiation in Norway. In contrast, divergent regions observed between sampling localities in Norway were shorter and found throughout the genome. High inbreeding and lower diversity were observed in the Norwegian samples, consistent with the proposed recolonisation bottleneck and subsequent drift. Several genomic regions were significantly associated with morphs and contained tens of genes of diverse functions, suggesting that colouration is unlikely to be the sole driver of divergence. Our results do not support the hypothesis of shared larger genomic features underlying intraspecific colour divergence. Instead, we observe gradual accumulation of differences into low-recombining regions, likely when additional factors like assortative mating and/or lack of gene flow favour their development.

Sustainable management of anadromous salmonid populations rests on good data on population status and knowledge about how populations and environments are linked. We used a 10-year data set consisting of river water temperature and discharge and complete daily sampling of the spawning runs of Atlantic salmon and sea trout in the river Etneelva, western Norway, to model the association between environmental triggers and timing of river ascendance. Median day for ascendance varied significantly among years. Peak migration for both species occurred at water discharges between 20 and 30 m3/s and temperatures between 10°C and 20°C. Escaped farmed salmon arrived 4–59 days later than wild salmon. Modelled projections in river temperature and discharge, based on different climate scenarios, suggest unpredictable effects from climate changes on population phenology. Angling exploitation rate of salmon after 2013 was significantly reduced compared with exploitation rates between 2005 and 2009. We conclude that (a) water discharge and temperature are major triggers for river ascendance in both species, (b) more extreme fluctuations in river temperature and discharge will affect ascendance timing, and (c) the changes may confound catch statistics and other data sources that are used to infer population status in salmonid populations. We encourage development of long and detailed time series of spawning stocks in index rivers to model impact factors and to calibrate information from other rivers.

Genetic introgression of domesticated plants and animals into wild populations occurs globally. Such introgression disrupts adaptive potential, reduces fitness in wild populations and threatens intraspecific genetic variation. The best-documented case of farmed introgression into wild populations is that of the Atlantic salmon (Salmo salar). Norway is the world's largest producer of farmed Atlantic salmon, and the industry is growing in Iceland and other countries. In Norway, genetic introgression resulting from farmed escapees breeding with wild conspecifics has been documented in approximately two-thirds of 250 salmon populations studied. This comprehensive quantification has been possible due to a panel of genetic markers diagnostic of farmed introgression. Improved genomic resources, continued selection and genetic drift in the farmed breeding lines, as well as new breeding lines in commercial production, call for an updated tool to quantify farmed genetic introgression. Here, we present second-generation panels of genetic markers diagnostic of farmed introgression in Norway and the first panels of genetic markers diagnostic of farmed introgression in Iceland. We show that these diagnostic markers provide increased power to detect introgression compared to the first-generation panel, as well as increased power compared to a genome-wide marker set. Improved accuracy will benefit the ongoing monitoring of farmed introgression and facilitate research into the ecological and functional effects of farmed introgression in wild populations.

When haemoglobin genotyping was implemented in the early 1960s to investigate population genetic structure in Atlantic cod (Gadus morhua), it became one of the first molecular genetic markers deployed in fisheries research worldwide. However, its suitability was questioned due to its potential for selection. While the issue of neutrality concerned the first population geneticists, markers under selection are now routinely used to study population genetic structure. Here, we revisited haemoglobin genotyping half a decade later to analyse >6000 mature Atlantic cod from 73 spawning locations throughout Norway’s approximately 2500 km coastline. A latitudinal gradient in allele frequencies, with a decrease in the HbI-2 allele towards the south, was observed. Our observed HbI-2 frequencies were consistently slightly lower than data from the 1960s, potentially reflecting adaptive changes to increasing sea temperatures. However, despite this difference, the observed north–south pattern in allele frequencies observed here and in the historical studies overlapped, aligning with current knowledge of population genetic structure in this species. We therefore conclude that this once questioned marker, which provided the first molecular genetic insights into genetic structure in Atlantic cod, provides knowledge consistent with the isolation by distance pattern revealed through decades of research in this species in this region.

The large estimates of mesopelagic fish biomass have fuelled harvesting interests in the relatively untouched ocean's twilight zone. The Mueller's pearlside, one of the most abundant species inhabiting the north Atlantic mesopelagic layer, is a candidate to such fisheries despite its enormous ecological importance and the insufficient knowledge about its population genetic structure. To shed light on the latter, 863 individuals sampled across the North Atlantic and Mediterranean were genotyped using 170 genome-wide SNPs. Analyses revealed habitat-driven differentiation in three units: Mediterranean Sea, oceanic samples, and Norwegian fjords. These groups were not completely isolated to each other as a cline of Mediterranean admixture was detected in the Eastern Atlantic façade up to latitude 47 °N in an otherwise genetically homogeneous oceanic cluster. Temperature seemed to modulate the differentiation patterns, and in the Mediterranean added to the complicated topography of the Greek Seas to shape genetic structure. In the Norwegian coastline, sills did not hamper genetic exchange among fjords ranging 200 km apart, probably due to the position of the species in the water column together with its swimming capacity. This genetic information should be combined with demographic properties to outline the management of this species prior to any eventual fishery attempt. ### Competing Interest Statement The authors have declared no competing interest.

Predicting the long-term impact of releases and introgression from non-native strains into wild populations remains an important conservation issue, particularly in fishes where stocking and aquaculture escapes have led to widespread genetic admixture between wild and cultured conspecifics. Here, we investigated the genetic response of two wild sea trout, Salmo trutta L., populations following long-term stocking programmes with non-native conspecifics. This included temporal sampling spanning 23 years and genome-wide SNP data from two neighbouring Danish rivers that from the 1970's to 1990's were heavily stocked with partially domesticated, non-local hatchery strains. To estimate wild-hatchery admixture we analysed 3656 SNPs in 195 wild-caught fish, 74 hatchery strain fish, and expanded collections temporally by analysing a subset 288 SNPs in 489 additional fish. Admixture estimates decreased from 46% to 62% input from the stocked strains to 25% seven generations after the last stocking. Introgression varied across the genome, indicative of selection for and against specific hatchery gene variants under wild conditions. For the first time in trout, strong temporal allele frequency changes were observed in a gene region harbouring the maturation gene six6 likely associated with divergent selection on age-at-maturity under hatchery versus wild conditions. The two populations showed low overlap between SNPs identified as under negative (or purifying) selection. Results point to selection against hatchery fish and partial recovery of both populations but also emphasise the role of local dynamics in shaping genetic responses to anthropogenic pressure and support the notion that introgression is likely to incur long-lasting changes to the genetic make-up of wild populations.

In commercial aquaculture, the production of triploid fish is currently the most practical approach to prevent maturation and farm-to-wild introgression following escapes. However, triploids often exhibit poor welfare, and the underlying mechanisms remain unclear. Inheritance issues associated with (sub-optimal) hydrostatic pressure treatments used to induce triploidy, or the genetic background of parental fish, have been speculated to contribute. Here, we quantified the frequency and type of chromosomal aberrations in Atlantic salmon subjected to a gradient of sub-optimal pressure treatments (Experiment 1) and from multiple mothers (Experiment 2). From these experiments, we genotyped a subsample of ~900 eyed eggs and all ~3,300 surviving parr across ~20 microsatellites. Chromosomal aberrations included aneuploidy and uniparental disomy, which are evidence of genetic nondisjunction. Although a low frequency of chromosomal aberrations were identified in eyed eggs from the diploid and triploid controls, our results demonstrated that sub-optimal pressure treatments resulted in lower triploidization rates, increased incidence of chromosomal aberrations, and higher egg mortality rates. We also observed maternal effects on triploidization success and incidence of chromosomal aberrations. In contrast to the results in eggs, chromosomal aberrations were rare among surviving parr, suggesting a purge of maladapted individuals during early development. This is the first study to document a link between chromosomal aberrations and early mortality in a non-mammalian vertebrate, and has implications for aquaculture breeding programs.

Disease interactions between farmed and wild populations have been poorly documented for most aquaculture species, in part due to the complexities to study this. Here, we tested 567 farmed Atlantic salmon escapees, captured in a Norwegian river during 2014-2018, for five viral infections that are prevalent in global salmonid aquaculture. Over 90% of the escapees were infected with one or more viruses. Overall prevalences were: 75.7% for piscine orthoreovirus (PRV-1), 43.6% for salmonid alphavirus (SAV), 31.2% for piscine myocarditis virus (PMCV), 1.2% for infectious pancreatic necrosis virus (IPNV) and 0.4% for salmon anaemia virus (ISAV). A significantly higher prevalence of PMCV infection was observed in immature compared to mature individuals. The prevalence of both SAV and PMCV infections was higher in fish determined by fatty acid profiling to be 'recent' as opposed to 'early' escapees that had been in the wild for a longer period of time. This is the first study to establish a time-series of viral infection status of escapees entering a river with a native salmon population. Our results demonstrate that farmed escapees represent a continuous source of infectious agents which could potentially be transmitted to wild fish populations.

Polyploidy occurs naturally across eukaryotic lineages and has been harnessed in the domestication of many crops and vertebrates. In aquaculture, triploidy can be induced as a biocontainment strategy, as it creates a reproductive barrier preventing farm-to-wild introgression, which is currently a major conservation issue for the industry. However, recent work suggests that triploidisation protocols may, on occasion, produce 'failed triploids' displaying diploidy, aneuploidy and aberrant inheritance. The potentially negative consequences for conservation and animal welfare motivate the need for methods to evaluate the success of ploidy-manipulation protocols early in the production process. We developed a semi-automated version of the MAC-PR (microsatellite DNA allele counting - peak ratios) method to resolve the allelic configuration of large numbers of individuals across a panel of microsatellite markers that can be used to infer ploidy, pedigree and inheritance aberrations. We demonstrate an application of the approach using material from a series of Atlantic salmon (Salmo salar) breeding experiments where ploidy was manipulated using a hydrostatic pressure treatment. We validated the approach to infer ploidy against blood smears, finding a > 99% agreement between these methods, and demonstrate its potential utility to infer ploidy as early as the embryonic stage. Furthermore, we present tools to assign diploid and triploid progeny to families and to detect aberrant inheritance, which may be useful for breeding programmes that utilise ploidy manipulation techniques. The approach adds to the ploidy verification toolbox. The increased precision in detecting ploidy and inheritance aberrations will facilitate the ability of triploidisation programmes to prevent farm-to-wild introgression.

AbstractElucidating the effects of domesticated organisms escaping into the natural environment represents a topic of importance in both evolutionary and conservation biology. However, when excluding the abundant data on salmonids, there is a lack of knowledge on this topic for marine fish aquaculture, which continues to expand globally. In order to bridge this empirical gap, we investigated a suspected escape of sexually mature domesticated Atlantic cod from a commercial marine fish farm in northern Norway. This involved genotyping samples of fish from cages on the farm, putatively identified escapees and wild cod captured in the region and samples of recently spawned eggs collected in the sea. Genetic analyses confirmed a farmed ancestry of the suspected escapees, and significantly, 27% of the sampled cod eggs. Furthermore, statistical analyses revealed a strong reduction in genetic variation in all samples of the farmed cod, including low effective population size and high degree of siblingship. These results thus document the escape of sexually mature adult cod and the release of fertilized domesticated cod eggs into the natural environment. Although it is possible that some of the mature escapees spawned post‐escape, the fact that only a single egg of potential hybrid farmed × wild origin was identified, together with the high number of mature cod in the farm, points to within cage spawning as the primary source of these eggs. This suggestion is supported by oceanic particle‐drift modelling, verifying that transport of eggs between the farm and the egg sampling locations was plausible. This study represents a rare documentation of interaction between domesticated and wild populations for a marine fish, pointing towards potential impacts on the local wild population.

ABSTRACTSustainable fisheries management is important for the continued harvest of the world's marine resources, especially as they are increasingly challenged by a range of climatic and anthropogenic factors. One of the pillars of sustainable fisheries management is the accurate identification of the biological units, i.e., populations. Here, we developed and implemented a genetic baseline for Atlantic herring harvested in the Norwegian offshore fisheries to investigate the validity of the current management boundaries. This was achieved by genotyping > 15,000 herring from the northern European seas, including samples of all the known populations in the region, with a panel of population‐informative SNPs mined from existing genomic resources. The final genetic baseline consisted of ~1000 herring from 12 genetically distinct populations. We thereafter used the baseline to investigate mixed catches from the North and Norwegian Seas, revealing that each management area consisted of multiple populations, as previously suspected. However, substantial numbers (up to 50% or more within a sample) of herring were found outside of their expected management areas, e.g., North Sea autumn‐spawning herring north of 62° N (average = 19.2%), Norwegian spring‐spawning herring south of 62° N (average = 13.5%), and western Baltic spring‐spawning herring outside their assumed distribution area in the North Sea (average = 20.0%). Based upon these extensive observations, we conclude that the assessment and management areas currently in place for herring in this region need adjustments to reflect the populations present. Furthermore, we suggest that for migratory species, such as herring, a paradigm shift from using static geographic stock boundaries towards spatial dynamic boundaries is needed to meet the requirements of future sustainable management regimes.

Increased knowledge of heritable traits in Atlantic Salmon (Salmo salar) is important to overcome bottlenecks in salmonid aquaculture. Atlantic salmonid populations, both landlocked and anadromous, represent an interesting model to gain insight into anadromy related traits, most notably, the probability to smoltify. While a previous study has identified several genomic regions diverging between anadromous and landlocked populations across the species range, the present study explores these data further with the aim to uncover if some of these genomic regions are linked to beneficial genetic traits associated with smoltification. In this study 17 of these loci were monitored in 669 anadromous salmon originating from 36 full-sibling families that had been reared under common garden conditions. The Smolt Index was calculated, using multiple visual markers, and provided a means of assessing smoltification stage. One SNP, located in Ssa04, showed a significant association with probability to smoltify, where individuals homozygous for the landlocked variant (LL) displayed a decrease in probability of smoltifying after one winter when compared with the homozygous for the anadromous variant (AA). This effect was independent of individual fish size. A separate common garden study comprising 200 individuals from either anadromous or landlocked strains showed that expression levels of ncor1, a thyroid mediator hormone located on the same chromosomal region (Ssa04), were significantly reduced in landlocked individuals post smoltification but remained constant in their anadromous counterparts. This study therefore suggests that while size is still the most important trigger for the induction of smoltification, there may also be an additional genetic component or trigger that has been ‘lost’ during the years deprived of SW transfer. In conclusion, the LL genotype identified here could potentially be used by the industry to delay smoltification and may also represent one of the first clues to the genetic regulation of smoltification in Atlantic salmon.

The mesopelagic zone represents one of the few habitats that remains relatively untouched from anthropogenic activities. Among the many species inhabiting the north Atlantic mesopelagic zone, glacier lanternfish (Benthosema glaciale) is the most abundant and widely distributed. This species has been regarded as a potential target for a dedicated fishery despite the scarce knowledge of its population genetic structure. Here, we investigated its genetic structure across the North Atlantic and into the Mediterranean Sea using 121 SNPs, which revealed strong differentiation among three main groups: the Mediterranean Sea, oceanic samples, and Norwegian fjords. The Mediterranean samples displayed less than half the genetic variation of the remaining ones. Very weak or nearly absent genetic structure was detected among geographically distinct oceanic samples across the North Atlantic, which contrasts with the low motility of the species. In contrast, a longitudinal gradient of differentiation was observed in the Mediterranean Sea, where genetic connectivity is known to be strongly shaped by oceanographic processes such as current patterns and oceanographic discontinuities. In addition, 12 of the SNPs, in linkage disequilibrium, drove a three clusters' pattern detectable through Principal Component Analysis biplot matching the genetic signatures generally associated with large chromosomal rearrangements, such as inversions. The arrangement of this putative inversion showed frequency differences between open-ocean and more confined water bodies such as the fjords and the Mediterranean, as it was fixed in the latter for the second most common arrangement of the fjord's samples. However, whether genetic differentiation was driven by local adaptation, secondary contact, or a combination of both factors remains undetermined. The major finding of this study is that B. glaciale in the North Atlantic-Mediterranean is divided into three major genetic units, information that should be combined with demographic properties to outline the management of this species prior to any eventual fishery attempt.

Introgression of non‐native conspecifics changes the genetic composition of wild populations, potentially leading to loss of local adaptations and fitness declines. However, long‐term data from wild populations are still relatively few. Here, we studied the effects of introgression in a Danish brown trout (Salmo trutta, L.) population, subjected to intensive stocking with domesticated hatchery fish of non‐native origin. We used wild‐caught genetically wild and admixed trout as well as fish from the partly domesticated hatchery strain used for stocking the river up until ~15 years prior to this study, to produce 22 families varying in hatchery/wild admixture. Following a replicated common‐garden experiment conducted in fish tanks from first feeding through 23 weeks at 7, 12, and 16°C, we observed a significant positive relationship between family admixture and fish size upon termination, an effect observed through all levels of admixture. Furthermore, the admixture effect was most distinct at the higher rearing temperatures. Although the hatchery strain used for stocking had been in culture for ~7 generations, it had not been deliberately selected for increased growth. These data thus demonstrate: (i) that growth had increased in the hatchery strain even in the absence of deliberate directional selection for this trait, (ii) that the increasing effect of admixture by temperature could represent inadvertent selection for performance in the hatchery strain at higher temperatures, and most significantly, (iii) that despite undergoing up to five generations of natural selection in the admixed wild population, the genetically increased growth potential was still detectable and thus persistent. Our findings suggest that altered growth patterns and potentially their cascading effects are of importance to the severity of hatchery/wild introgression, especially under changing‐climate scenarios and are of general significance to conservation practitioners seeking to evaluate long‐term effects of intra‐specific hybridization including under recovery.

Each year thousands of farmed Atlantic salmon escape from seawater net pens, and introgression has been documented in a range of wild populations. Due to greater experience in the wild, escapees that have been on the run for a longer period, and successfully transitioned to a wild diet (classified: "early escapees"), could potentially have a higher spawning success and contribute more to introgression than those that have been on the run for a shorter period and/or have not transitioned to a wild diet (classified: "recent escapees"). This is the first study to examine how the escape history of farmed Atlantic salmon captured in multiple rivers and coastal fisheries, varies in time and space. During 2011-2021, adult farmed escaped salmon were captured in four rivers and at six coastal sites in Norway. The level of linoleic acid, a terrestrial fatty acid high in commercial salmon feeds but low in the natural diet of wild salmon, was used to classify the farmed salmon as early or recent escapees. We observed temporal declines in the relative proportions of escaped vs. wild salmon in the catches, and the relative proportion of early vs. recent escapees in the most southern river (driven by samples from 2011 to 2015). Overall, 14% of the escaped salmon caught in the period were classified as early escapees. The relative proportion of early escapees was lower in the two southernmost rivers (21.2% and 6.30%), as compared to the coastal fisheries (40.9%) and the northernmost river (77.6%). Both aquaculture-management regulations and production strategies have likely influenced these observations.

The greater argentine is a benthopelagic fish with a northern amphi-Atlantic and southern Arctic distribution. Landings of this species have been steadily increasing since the early 2000s, mainly for ultra-processed fish food. The rising economic importance of this species begs for an accurate delineation of the management units needed to ensure the sustainability of the fishery. The alignment between management and biological units was investigated on three of the ICES stocks in the NE Atlantic (123a4, 5a14, and 5b6a) by genotyping 88 ad hoc-developed SNPs on 1299 individuals sampled along the Norwegian coast, north of Shetland, around the Faroe Islands, and in the Denmark Strait within Icelandic waters. Candidate loci to positive selection were particularly crucial for units’ delineation and supported the current ICES 5b6a and 5a14 stocks around the Faroe Islands and Iceland, respectively. However, within the third stock investigated, 123a4, which corresponded mainly to the Norwegian coast, the sample from area 3a (Skagerrak) was significantly different from all the remaining in the same stock. This differentiation advocates for reconsideration of the present policy and suggests considering ICES Area 3a (Skagerrak) as an independent management unit. The environmental conditions in the Skagerrak area have left a genetic print on other marine taxa, which could putatively be the case in the greater argentine.