We present a novel framework for leveraging synthetic ICU time-series data not only to train but also to rigorously and trustworthily evaluate predictive models, both at the population level and within fine-grained demographic subgroups. Building on prior diffusion and VAE-based generators (TimeDiff, HealthGen, TimeAutoDiff), we introduce Enhanced TimeAutoDiff, which augments the latent diffusion objective with distribution-alignment penalties. We extensively benchmark all models on MIMIC-III and eICU, on 24-h mortality and binary length-of-stay tasks. Our results show that Enhanced TimeAutoDiff reduces the gap between real-on-synthetic and real-on-real evaluation (“TRTS gap”) by over 70 _TRTS≤ 0.014 AUROC, while preserving training utility ( _TSTR≈ 0.01). Crucially, for 32 intersectional subgroups, large synthetic cohorts cut subgroup-level AUROC estimation error by up to 50
Generative models are increasingly used to augment medical imaging datasets for fairer AI. Yet a key assumption often goes unexamined: that generators themselves produce equally high-quality images across demographic groups. Models trained on imbalanced data can inherit these imbalances, yielding degraded synthesis quality for rare subgroups and struggling with demographic intersections absent from training. We refer to this as the imbalanced generator problem. Existing remedies such as loss reweighting operate at the optimization level and provide limited benefit when training signal is scarce or absent for certain combinations. We propose CompDiff, a hierarchical compositional diffusion framework that addresses this problem at the representation level. A dedicated Hierarchical Conditioner Network (HCN) decomposes demographic conditioning, producing a demographic token concatenated with CLIP embeddings as cross-attention context. This structured factorization encourages parameter sharing across subgroups and supports compositional generalization to rare or unseen demographic intersections. Experiments on chest X-rays (MIMIC-CXR) and fundus images (FairGenMed) show that CompDiff compares favorably against both standard fine-tuning and FairDiffusion across image quality (FID: 64.3 vs. 75.1), subgroup equity (ES-FID), and zero-shot intersectional generalization (up to 21
Per-subgroup fairness audits of medical image classifiers face a sample-size problem: minority subgroups in held-out test sets have so few samples that the resulting confidence intervals on per-subgroup performance are wider than the bias the audit is meant to detect. We argue that a demographically-conditioned synthetic generator can do both: mitigate bias on the training side and detect bias on the evaluation side. Working on COVID-19 chest CT classification with an end-to-end fine-tuned Stable Diffusion 2.1 generator, we make two findings. For bias mitigation (training), a demographically-balanced synthetic cohort is most useful as a pretraining prior, not as joint augmentation: with the same fixed data, sequential pretraining followed by fine-tuning substantially outperforms joint augmentation, and the resulting classifier surpasses the full-real baseline at ∼100× real-data efficiency. For bias detection (evaluation), across five synthetic minority cohorts and five classifier seeds, the synthetic estimator reproduces the subgroup ranking of a well-powered real oracle (Spearman ρ= 1.00 on MCC and Recall) and gives the more reliable per-cell estimate where the small real test set runs out of samples. The synthetic cohort is therefore most useful in exactly the cells that fairness audits care about, as both a fix for and a measure of subgroup bias.
Extracting multi-step explanations from knowledge graphs poses a combinatorial challenge requiring both heuristic guidance (as candidates proliferate with depth) and credit assignment (as path quality emerges over extended sequences). Frontier LLMs, strong on knowledge/reasoning benchmarks, offer a compelling source of such heuristics, yet their knowledge comes sans guarantees and compositional performance degrades as chains lengthen. We thus present TESSERA, a 3-part neuro-symbolic framework that uses LLMs in a circumscribed role: for local discriminative judgement rather than autonomous multi-step generation; the knowledge graph then defines the hypothesis space enforcing hard structural constraints, and MCTS coordinates the long-horizon search with principled credit assignment via backpropagation. LLMs perform dual roles as a prior policy biasing exploration and a comparative state evaluator supplying reward signals. Evaluation on drug mechanism elucidation across two complementary knowledge graphs demonstrates fidelity to curated biology while surfacing coherent alternative mechanisms, with ablations confirming discriminative contribution from both LLM components. Beyond its current application, our framework offers a general paradigm for compositional reasoning over structured knowledge.
Ensuring fairness in competitive sports requires robust mechanisms for detecting prohibited substances. Despite established regulations, challenges persist in accurately identifying new and emerging doping agents. This study introduces the use of Graph Neural Network (GNN) and Explainable AI (XAI) to classify substances as prohibited or non-prohibited, based on molecular and pharmacological data. The study utilizes Knowledge Graphs (KG) of heterogeneous type to develop predictive models. Explainability methods like Integrated Gradients and Saliency provide transparency into the models' decisions, ensuring traceability and accountability in classification results. By offering a novel, AI-driven approach to doping detection, this work supports regulatory bodies in making informed decisions and enhances the robustness of anti-doping measures.
Audio-language models (ALMs) generate linguistic descriptions of sound-producing events and scenes. Advances in dataset creation and computational power have led to significant progress in this domain. This paper surveys 69 datasets used to train ALMs, covering research up to September 2024 (https://github.com/GLJS/audio-datasets). The survey provides a comprehensive analysis of dataset origins, audio and linguistic characteristics, and use cases. Key sources include YouTube-based datasets such as AudioSet, with over two million samples, and community platforms such as Freesound, with over one million samples. The survey evaluates acoustic and linguistic variability across datasets through principal component analysis of audio and text embeddings. The survey also analyzes data leakage through CLAP embeddings, and examines sound category distributions to identify imbalances. Finally, the survey identifies key challenges in developing large, diverse datasets to enhance ALM performance, including dataset overlap, biases, accessibility barriers, and the predominance of English-language content, while highlighting specific areas requiring attention: multilingual dataset development, specialized domain coverage and improved dataset accessibility.
Radiomics is a tool for medical imaging analysis that could have a relevant role in precision oncology by offering precise quantitative support for clinical decision-making. The Radiomics Quality Score (RQS) is a tool developed to assess the rigour of radiomics studies that has now been widely adopted by researchers. Although RQS version 1.0 established a benchmark, an updated framework is required to account for evolving knowledge and ensure optimal evaluation of the quality of radiomics studies through the inclusion of fairness, explainability, rigorous quality control and harmonization. In this Review, we introduce the updated RQS 2.0, which maintains the scientific rigour of its predecessor and addresses these contemporary needs, and therefore could potentially accelerate clinical translation. Moreover, we introduce the radiomics readiness levels, inspired by the technology readiness level framework, which are integrated in RQS 2.0 and reflect nine distinct levels of incremental improvement in radiomics research with the ultimate aim of clinical implementation. We also detail anticipated future directions in radiomics, outlining a strategic vision to advance precision oncology, which is the ultimate aim of RQS 2.0. The Radiomics Quality Score (RQS) was developed to assess the rigour of studies using radiomics, a tool for medical imaging analysis. The RQS has been widely used in the field and now needs an update (RQS 2.0) to address contemporary needs. The authors of this Review introduce RQS 2.0, which integrates radiomics readiness levels to provide a structured framework towards clinical implementation.
Generating realistic synthetic health data (e.g., electronic health records), holds promise for fundamental research, AI model development, and enhancing data privacy safeguards. Generative Adversarial Networks (GANs) have been employed for this purpose, but their performance is largely constrained by their reliance on training data, rendering them inadequate for rare or previously unseen diseases. This study proposes Onto-CGAN, a novel generative framework that combines knowledge from disease ontologies with GANs to generate unseen diseases that are not present in the training data. The quality of the generated data is evaluated using variable distributions, correlation coefficients, and machine learning model performance. Our findings demonstrate that Onto-CGAN generates unseen diseases with statistical characteristics comparable to the real data, and significantly improves the training of machine learning models. This innovative approach addresses the scarcity of data for rare diseases, offering valuable applications in data augmentation, hypothesis generation, and preclinical validation of clinical models.
Audio-language models have shown promising results in various sound understanding tasks, yet they remain limited in their ability to reason over the fine-grained semantics of sound. In this paper, we present AudSemThinker, a model whose reasoning is structured around a framework of auditory semantics inspired by human cognition. To support this, we introduce AudSem, a novel dataset specifically curated for semantic descriptor reasoning in audio-language models. AudSem addresses the persistent challenge of data contamination in zero-shot evaluations by providing a carefully filtered collection of audio samples paired with captions generated through a robust multi-stage pipeline. Our experiments demonstrate that AudSemThinker outperforms state-of-the-art models across multiple training settings, highlighting its strength in semantic audio reasoning. Both AudSemThinker and the AudSem dataset are released publicly.
Large Audio-Language Models (LALMs) perform well on audio understanding tasks but lack multistep reasoning and tool-calling found in recent Large Language Models (LLMs). This paper presents AudioToolAgent, a framework that coordinates audio-language models as tools via a central LLM agent that accesses tool adapters for audio question answering and speech-to-text. The agent reasons about which tools to invoke, how to formulate follow-up queries, and how to arbitrate conflicting tool outputs, without accessing the audio. Experiments with MMAU, MMAR, and MMAU-Pro show state-of-the-art accuracy: up to 77.50
This paper presents a comprehensive systematic review of generative models (GANs, VAEs, DMs, and LLMs) used to synthesize various medical data types, including imaging (dermoscopic, mammographic, ultrasound, CT, MRI, and X-ray), text, time-series, and tabular data (EHR). Unlike previous narrowly focused reviews, our study encompasses a broad array of medical data modalities and explores various generative models. Our aim is to offer insights into their current and future applications in medical research, particularly in the context of synthesis applications, generation techniques, and evaluation methods, as well as providing a GitHub repository as a dynamic resource for ongoing collaboration and innovation. Our search strategy queries databases such as Scopus, PubMed, and ArXiv, focusing on recent works from January 2021 to November 2023, excluding reviews and perspectives. This period emphasizes recent advancements beyond GANs, which have been extensively covered in previous reviews. The survey also emphasizes the aspect of conditional generation, which is not focused on in similar work. Key contributions include a broad, multi-modality scope that identifies cross-modality insights and opportunities unavailable in single-modality surveys. While core generative techniques are transferable, we find that synthesis methods often lack sufficient integration of patient-specific context, clinical knowledge, and modality-specific requirements tailored to the unique characteristics of medical data. Conditional models leveraging textual conditioning and multimodal synthesis remain underexplored but offer promising directions for innovation. Our findings are structured around three themes: (1) Synthesis applications, highlighting clinically valid synthesis applications and significant gaps in using synthetic data beyond augmentation, such as for validation and evaluation; (2) Generation techniques, identifying gaps in personalization and cross-modality innovation; and (3) Evaluation methods, revealing the absence of standardized benchmarks, the need for large-scale validation, and the importance of privacy-aware, clinically relevant evaluation frameworks. These findings emphasize the need for benchmarking and comparative studies to promote openness and collaboration.
The International Semantic Web Research School (ISWS) is a week-long intensive program designed to immerse participants in the field. This document reports a collaborative effort performed by ten teams of students, each guided by a senior researcher as their mentor, attending ISWS 2023. Each team provided a different perspective to the topic of creative AI, substantiated by a set of research questions as the main subject of their investigation. The 2023 edition of ISWS focuses on the intersection of Semantic Web technologies and Creative AI. ISWS 2023 explored various intersections between Semantic Web technologies and creative AI. A key area of focus was the potential of LLMs as support tools for knowledge engineering. Participants also delved into the multifaceted applications of LLMs, including legal aspects of creative content production, humans in the loop, decentralised approaches to multimodal generative AI models, nanopublications and AI for personal scientific knowledge graphs, commonsense knowledge in automatic story and narrative completion, generative AI for art critique, prompt engineering, automatic music composition, commonsense prototyping and conceptual blending, and elicitation of tacit knowledge. As Large Language Models and semantic technologies continue to evolve, new exciting prospects are emerging: a future where the boundaries between creative expression and factual knowledge become increasingly permeable and porous, leading to a world of knowledge that is both informative and inspiring.
The growing availability of biomedical data offers vast potential to improve human health, but the complexity and lack of integration of these datasets often limit their utility. To address this, the Biomedical Data Translator Consortium has developed an open-source knowledge graph-based system-Translator-designed to integrate, harmonize, and make inferences over diverse biomedical data sources. We announce here Translator's initial public release and provide an overview of its architecture, standards, user interface, and core features. Translator employs a scalable, federated, knowledge graph framework for the integration of clinical, genomic, pharmacological, and other biomedical knowledge sources, enabling query retrieval, inference, and hypothesis generation. Translator's user interface is designed to support the exploration of knowledge relationships and the generation of insights, without requiring deep technical expertise and gradually revealing more detailed evidence, provenance, and confidence information, as needed by a given user. To demonstrate Translator's application and impact, we highlight features of the user interface in the context of three real-world use cases: suggesting potential therapeutics for patients with rare disease; explaining the mechanism of action of a pipeline drug; and screening and validating drug candidates in a model organism. We discuss strengths and limitations of reasoning within a largely federated system and the need for rich concept modeling and deep provenance tracking. Finally, we outline future directions for enhancing Translator's functionality and expanding its data sources. Translator represents a significant step forward in making complex biomedical knowledge more accessible and actionable, aiming to accelerate translational research and improve patient care.
Blockchain technology promises enhanced data ownership, control, and interoperability in healthcare, yet security and privacy concerns continue to hinder its adoption. Existing surveys examine blockchain-based privacy challenges, but they lack a systematic analysis and maturity evaluation of privacy-preserving techniques tailored to healthcare data sharing. This paper presents a systematic review of blockchain-based privacy-preserving solutions, analyzing blockchain details, applied privacy methods, regulatory compliance, and maturity levels using Technology Readiness Levels (TRLs). Our findings reveal that authentication and authorization is the most explored stage, dominated by smart contracts and ciphertext-policy attribute-based encryption. Proxy re-encryption is frequently used for data transfer, while privacy-preserving search and verification remain underexplored. On/off-chain mechanisms are commonly applied to balance privacy and storage efficiency. TRL assessment shows that most solutions remain at the proof-of-concept stage (TRL3), with only limited progress to prototype validation (TRL4–TRL5), highlighting the gap between experimental designs and real-world deployment. To guide developers and researchers, we identify two primary patterns of blockchain integration and propose a framework for system design. We also compare methods across data-sharing stages, outlining their strengths and limitations to support informed selection. In conclusion, while research interest is growing, the field remains at an early stage of maturity. Addressing this gap requires stronger implementation capacity, access to clinical data, and robust regulatory alignment. We emphasize the importance of clinical validation and real-world testing to advance privacy-preserving blockchain solutions toward practical adoption in healthcare.
Recent advancements in vision-language systems have improved the accuracy of Radiological Visual Question Answering (VQA) Models. However, some challenges remain across each stage of model development: limited expert-labeled images hinders data procurement at scale; the intricate and nuanced patterns of radiological images make modeling inherently difficult; and the lack of evaluation evaluation efforts makes it difficult to identify cases where the model might be ill-conditioned. In this study, we fine-tune a lightweight 3B parameter vision-language model for Radiological VQA, demonstrating that small models, when appropriately tuned with curated data, can achieve robust performance across both open- and closed-ended questions. We propose a cost-effective training pipeline from synthetic question-answer pair generation to multi-stage fine-tuning on specialised radiological domain-targeted datasets (e.g., ROCO v2.0, MedPix v2.0). Our results show that despite operating at a fraction of the scale of state-of-the-art models such as LLaVA-Med, our model achieves promising performance given its small parameter size and the limited scale of training data. We introduce a lightweight saliency-based diagnostic tool that enables domain experts to inspect VQA model performance and identify ill-conditioned failure modes through saliency analysis.
The standardization of clinical data elements (CDEs) aims to ensure consistent and comprehensive patient information across various healthcare systems. Existing methods often falter when standardizing CDEs of varying representation and complex structure, impeding data integration and interoperability in clinical research. This paper presents CDE-Mapper, a framework that combines a retrieval-augmented generation strategy with large language models to automate the alignment of CDEs with controlled vocabularies. Our modular approach features query decomposition to manage varying levels of CDEs complexity, integrates expert-defined rules within prompt engineering, and employs in-context learning alongside multiple retriever components to resolve terminological ambiguities. In addition, we propose a knowledge reservoir validated by a human-in-loop approach, achieving accurate concept linking for future applications while minimizing computational costs. For four diverse datasets, CDE-Mapper achieved an average of 7.2% higher accuracy improvement compared to baseline methods. This work highlights the potential of advanced language models in improving data harmonization and significantly advancing capabilities in clinical decision support systems and research.
Audio question answering (AQA) requires models to understand acoustic content and perform complex reasoning. Current models struggle with dataset imbalances and unstable training dynamics. This work combines curriculum learning with statistical data balancing to address these challenges. The method labels question difficulty using language models, then trains progressively from easy to hard examples. Statistical filtering removes overrepresented audio categories, and guided decoding constrains outputs to valid multiple-choice formats. Experiments on the DCASE 2025 training set and five additional public datasets show that data curation improves accuracy by 11.7
Barend Mons合作论文数University of Rotterdam and9