The debate about which scoring rule best measures the accuracy of our credences has largely been conducted on an a priori basis. We pursue an empirical approach, asking which rule best predicts a practical, decision-relevant criterion: Lockean accuracy, the ability to make correct categorical judgments based on a threshold of belief. Analyzing a large dataset of probability judgments, we compare the most widely used scoring rules (Brier, logarithmic, spherical, absolute error, and power rules) and find that, among them, there is no single best one. Instead, the optimal choice is context dependent: the Spherical score is the best predictor for lower belief thresholds, while the Power3 rule is best at higher thresholds. In particular, the widely used Brier and log scores are rarely optimal for this task. A mediation analysis reveals that while much of a rule’s success is explained by its ability to reward calibration and sharpness, the Spherical and Brier rules retain significant predictive power independently of these standard virtues.
Background: According to the wisdom of the crowd idea, crowds can be smart even when most of their members are not. Much of the literature assumes that wisdom is to be extracted from a crowd by averaging the numerical predictions or probabilistic estimates of its members. Purpose: We compare a broad range of aggregation procedures, from simple averaging methods to optimized dynamic models and neural networks. Research Design: We apply multiple aggregation methods — including simple averaging, optimized weighted averages, a dynamic Hegselmann–Krause model of social learning, and two neural network architectures — to a dataset of probabilistic judgments, evaluating performance by both classification accuracy and Brier scores. Study Sample: 376 individuals providing probabilistic judgments about 1,200 statements with known ground truth. Data Collection and/or Analysis: Performance of all aggregation methods was assessed using classification accuracy and Brier scores, with neural network architectures trained to learn an optimal aggregation function directly from the data. Results: More sophisticated aggregators yield better performance. While some simple averaging methods exceed the performance of the average participant, optimized weighted averages and the Hegselmann–Krause model achieve significantly higher performance. Two neural network architectures outperform all other methods by a large margin, reaching a level of accuracy vastly superior to that of even the best individual in the crowd. Conclusions: Crowd wisdom is best not thought of as a fixed property but rather as something that can be achieved to different degrees, depending on the method used for aggregating opinions.
Large language models (LLMs) have been reported to linearly encode truthfulness, yet recent work questions this finding's generality. We reconcile these views with the truthfulness spectrum hypothesis: the representational space contains directions ranging from broadly domain-general to narrowly domain-specific. To test this hypothesis, we systematically evaluate probe generalization across five truth types (definitional, empirical, logical, fictional, and ethical), sycophantic and expectation-inverted lying, and existing honesty benchmarks. Linear probes generalize well across most domains but fail on sycophantic and expectation-inverted lying. Yet training on all domains jointly recovers strong performance, confirming that domain-general directions exist despite poor pairwise transfer. The geometry of probe directions explains these patterns: Mahalanobis cosine similarity between probes near-perfectly predicts cross-domain generalization (R^2=0.98). Concept-erasure methods further isolate truth directions that are (1) domain-general, (2) domain-specific, or (3) shared only across particular domain subsets. Causal interventions reveal that domain-specific directions steer more effectively than domain-general ones. Finally, post-training reshapes truth geometry, pushing sycophantic lying further from other truth types, suggesting a representational basis for chat models' sycophantic tendencies. Together, our results support the truthfulness spectrum hypothesis: truth directions of varying generality coexist in representational space, with post-training reshaping their geometry. Code for all experiments is provided in https://github.com/zfying/truth_spec.
Recent work has demonstrated that complex visual stimuli can be decoded from human brain activity using deep generative models, helping brain science researchers interpret how the brain represents real-world scenes. However, most current approaches leverage mapping brain signals into intermediate image or text feature spaces before guiding the generative process, masking the effect of contributions from different brain areas on the final reconstruction output. In this work, we propose \textit{NeuroAdapter}, a visual decoding framework that directly conditions a latent diffusion model on brain representations, bypassing the need for intermediate feature spaces. Our method demonstrates competitive visual reconstruction quality on public fMRI datasets compared to prior work, while providing greater transparency into how brain signals shape the generation process. To this end, we contribute an Image–Brain BI-directional interpretability framework (\textit{IBBI}) which investigates cross-attention mechanisms across diffusion denoising steps to reveal how different cortical areas influence the unfolding generative trajectory. Our results highlight the potential of end-to-end brain-to-image decoding and establish a path toward interpreting diffusion models through the lens of visual neuroscience.
Inferring the ground-truth from noisy crowdsourced labels is an important theoretical and practical problem. Neural network-based methods offer an alternative to classical Bayesian models which require specifying a family of generative models used for inference. However, current models either still rely on fairly simple generative models for inference or require pseudo-labels or synthetic data to train the aggregate classifier. We propose a graph VAE architecture in which the decoder and encoder use GAT-based message passing on the adjacency graph of a crowdsourced dataset and its dual, respectively. The ground-truth labels are treated as latent variables, enabling unsupervised representation learning without needing to train a separate classifier. We show our model achieves state of the art performance on crowdsourcing benchmarks. We then demonstrate the generality of our approach by showing how the original crowdsourcing graph can be augmented to incorporate side information such as representations from neural network classifiers trained on the noisy labels to substantially boost their classification performance at test time.
The perceptual representations supporting our ability to recognize faces remain a computational mystery. Deep neural networks offer mechanistic hypotheses for human face perception, but theoretically distinct models often make indistinguishable representational predictions for randomly sampled faces. To expose diagnostic differences among these hypotheses, we compared six neural network models sharing an architecture but trained on distinct tasks, using face pairs optimized to elicit contrasting model predictions ("controversial" pairs) alongside randomly sampled pairs. We tested model predictions against face-dissimilarity judgments from 864 human participants across stimulus sets differing in realism and pose variation. Models prioritizing high-level, invariant structures (trained via inverse rendering, face identification, or object classification) most robustly matched human judgments. Furthermore, models trained on natural images typically outperformed synthetic-trained counterparts. Together, these findings suggest that human face perception is shaped by mechanisms that infer latent causes of facial appearance, discount nuisance variation, and are tuned by natural image statistics.
Visual decoding from brain signals is a key challenge at the intersection of computer vision and neuroscience, requiring methods that bridge neural representations and computational models of vision. A field-wide goal is to achieve generalizable, cross-subject models. A major obstacle towards this goal is the substantial variability in neural representations across individuals, which has so far required training bespoke models or fine-tuning separately for each subject. To address this challenge, we introduce a meta-optimized approach for semantic visual decoding from fMRI that generalizes to novel subjects without any fine-tuning. By simply conditioning on a small set of image-brain activation examples from the new individual, our model rapidly infers their unique neural encoding patterns to facilitate robust and efficient visual decoding. Our approach is explicitly optimized for in-context learning of the new subject's encoding model and performs decoding by hierarchical inference, inverting the encoder. First, for multiple brain regions, we estimate the per-voxel visual response encoder parameters by constructing a context over multiple stimuli and responses. Second, we construct a context consisting of encoder parameters and response values over multiple voxels to perform aggregated functional inversion. We demonstrate strong cross-subject and cross-scanner generalization across diverse visual backbones without retraining or fine-tuning. Moreover, our approach requires neither anatomical alignment nor stimulus overlap. This work is a critical step towards a generalizable foundation model for non-invasive brain decoding.
Linear probes are widely used in interpretability research and often compared by cosine similarity. The Mahalanobis cosine similarity (MCS) between two directions, which reweights the inner product by test data covariance, is a natural task-aware refinement. Ying et al. (2026) report that a probe's MCS to a reference probe trained on the out-of-distribution (OOD) data near-perfectly linearly predicts the probe's OOD AUROC (R^2 = 0.98). Here, we extend this empirical finding across models, layers, and concept domains, and prove this general phenomenon in closed form: For balanced classes whose projections are Gaussian, OOD AUROC and MCS to the reference probe are linear because both are sigmoid-shaped functions of the probe's signal-to-noise ratio (SNR) on the test data. The theory also predicts when this linearity fails, which we verify empirically. MCS offers a theoretically grounded and empirically effective alternative to Euclidean cosine similarity for comparing linear probes.
Abstraction and generalization are essential for flexible decision-making in novel situations. Recent work in humans and monkeys has shown how abstract variables are encoded by the representational geometry of neural population activity. However, these observations—which are typically made after learning has converged—demonstrate the product of abstraction, but not the process by which abstract knowledge is learned: how are the inputs from concrete experiences transformed into abstract knowledge, and how do neural circuits perform these operations and relay this knowledge? To address these questions, we developed a factorized model of temporal abstraction that builds on the successor representation. The model disentangles the contributions of different levels of abstract learning—from stimulus-stimulus associations to a generalizable task schema—in the form of a factorized prediction error that relates the change in relational knowledge to a predicted change in representational geometry on each trial. We fit the model to the behavior of human participants performing a context-dependent decision task during fMRI. The model captured the learning dynamics at multiple timescales, including the increasing contribution of generalization as participants transferred abstracted relational knowledge between novel task instances. In fMRI, BOLD activity in hippocampus—where, in past work, abstract knowledge was represented after learning—was increasingly attributed to the acquisition of abstract knowledge based on generalization. A similar temporal pattern was observed in entorhinal cortex, a putative source of low-dimensional structural information, and orbitofrontal cortex (OFC), which may depend on relational knowledge to represent state relationships as a cognitive map that guides choices. Indeed, individual variation in the generalization signal in OFC correlated with behavioral performance on key trials that required relational knowledge. Our findings show how the brain regions previously shown to represent abstract knowledge after learning also support the process of abstraction as it evolves from learning concrete associations to a generalizable schema. Our approach offers a computational framework for disentangling the operations driving abstract learning and probing their neural correlates in the dynamics of representational geometry. ### Competing Interest Statement The authors have declared no competing interest.
Computational hypotheses about brain information processing can be expressed in neural network models. Neuroscientists have begun to compare such models in terms of their alignment with neural and behavioural data. The high parametric capacity of these models is essential to their ability to capture cognitive processes but also enables them to approximate arbitrary functions, making distinct models difficult to discriminate experimentally. Model comparisons using stimuli sampled from the training distribution often fail to reveal differences. This challenge can be met by optimizing stimulus sets for model discrimination and by leveraging out-of-distribution generalization as a severe test. This Review explains the emerging methods for optimizing stimuli to adjudicate among neural network models. These methods seek stimulus sets that are controversial among the models in that they make the models disagree in their predictions of the experimental data. We discuss the choices researchers must make, including a prior over candidate stimuli (such as naturalistic images), a measure of the power to discriminate among alternative models and a procedure for selecting or synthesizing stimulus sets that maximize model-comparison power. Historically, researchers have chosen either natural or artificial stimuli for a given study, prioritizing ecological validity or model-comparison power, respectively. Tempered by a prior, controversial stimuli offer a synthesis of these classical approaches, combining the greater ecological validity of naturalistic stimuli with the greater power for model comparison enabled by artificial stimuli. We offer a unified perspective on current work, drawing connections to Bayesian optimal experimental design.
Prompting steers large language models (LLMs) and vision-language models (VLMs) without weight updates, but it remains unclear how instruction changes reshape internal representations to produce behavior. We introduce a nested geometric decomposition framework that treats prompting as a transformation of the representational geometry of the content following the prompt. For each prompt pair, we align representations of the same stimuli under two prompts using increasingly expressive stimulus-invariant maps: translation, rigid transformation with uniform scaling, sequential axis scaling, affine transformation, and nonlinear transformation. We then causally test each map by replacing a single layer's prompt-A hidden state for held-out stimuli with its mapped counterpart and measuring recovery of prompt-B representational geometry and behavior. Across three LLMs, three VLMs, and six text or image datasets spanning style, emotion, scene content, and number, prompts consistently reshape representations toward the instructed task structure. Cross-validated variance decomposition shows that much prompt-induced activation change is captured by shape-preserving maps, especially translation and rigid transformation with uniform scaling, while tier profiles reveal model- and task-specific routing strategies across layers. Crucially, although translation and rigid tiers already improve behavioral agreement, affine transformation is the first tier to nearly recover target-prompt task geometry and yields corresponding behavioral gains. This suggests that cross-dimensional linear mixing is a key mechanism by which prompts reorganize representations toward instructed task structure. Our framework decomposes prompt-induced representational change into interpretable geometric components and reveals how models route task-relevant structure to produce prompt-driven behavior.
Representations play a central role in the study of both biological and artificial intelligence, as well as philosophy of mind. Across neuroscience, computer science, and philosophy, a recurring theme is that representations not only carry information but should be “useful” for or “usable” by an agent in some sense. Here, we review how the “usefulness” of representations has been conceptualized and how it figures into different conceptions of representation. We identify and explore four aspects of use and usability: representations generally carry information; that information may or may not be useful and it may or may not be encoded in a usable format; and the representations may or may not be used downstream. Building on these four aspects of information and use, we then organize existing perspectives on neural representations into three levels: Representations as Information (Level 1); Representations as Usable (Level 2); and Representations as Used (Level 3). Our account is meant to give readers an appreciation for the diversity of notions of “neural representation,” help them navigate the vast and multi-disciplinary literature on the topic, and help them clarify the appropriate notion of representation for their own investigations.
Spatial and temporal resource constraints are critical for both biological and artificial intelligent systems. Here we define differentiable cost terms for breadth, depth, and time within a recurrent convolutional neural network conceived as a finite subset of an infinite lattice. We optimize these costs jointly with task errors via backpropagation. We set different pressures on breadth, depth, and time, which leads to diverse computational graphs emerging organically through training. We find that all three resources can be traded off against each other to achieve a given level of accuracy. Networks grow in all three dimensions with task complexity and spontaneously take more recurrent steps when inputs are occluded. Surprisingly, time used by the model correlates with human reaction times in an object recognition task. Our framework provides a normative account of how resource constraints shape neural architectures, connecting to questions about brain design in neuroscience, and may help illuminate the diversity of neural solutions found in nature.
Vision foundation models trained with self-supervised objectives achieve strong performance across diverse tasks and exhibit emergent object segmentation properties. However, their alignment with human object perception remains poorly understood. Here, we introduce a behavioral benchmark in which participants make same/different object judgments for dot pairs on naturalistic scenes, scaling up a classical psychophysics paradigm to over 1000 trials. We test a diverse set of vision models using a simple readout from their representations to predict subjects' reaction times. We observe a steady improvement across model generations, with both architecture and training objective contributing to alignment, and transformer-based models trained with the DINO self-supervised objective showing the strongest performance. To investigate the source of this improvement, we propose a novel metric to quantify the object-centric component of representations by measuring patch similarity within and between objects. Across models, stronger object-centric structure predicts human segmentation behavior more accurately. We further show that matching the Gram matrix of supervised transformer models, capturing similarity structure across image patches, with that of a self-supervised model through distillation improves their alignment with human behavior, converging with the prior finding that Gram anchoring improves DINOv3's feature quality. Together, these results demonstrate that self-supervised vision models capture object structure in a behaviorally human-like manner, and that Gram matrix structure plays a role in driving perceptual alignment.
Understanding human motion processing is essential for building reliable, human-centered computer vision systems. Although deep neural networks (DNNs) achieve strong performance in optical flow estimation, they remain less robust than humans and rely on fundamentally different computational strategies. Visual motion illusions provide a powerful probe into these mechanisms, revealing how human and machine vision align or diverge. While recent DNN-based motion models can reproduce dynamic illusions such as reverse-phi, it remains unclear whether they can perceive illusory motion in static images, exemplified by the Rotating Snakes illusion. We evaluate several representative optical flow models on Rotating Snakes and show that most fail to generate flow fields consistent with human perception. Under simulated conditions mimicking saccadic eye movements, only the human-inspired Dual-Channel model exhibits the expected rotational motion, with the closest correspondence emerging during the saccade simulation. Ablation analyses further reveal that both luminance-based and higher-order color–feature–based motion signals contribute to this behavior and that a recurrent attention mechanism is critical for integrating local cues. Our results highlight a substantial gap between current optical-flow models and human visual motion processing, and offer insights for developing future motion-estimation systems with improved correspondence to human perception and human-centric AI.
Every day, we judge the probability of propositions. When we communicate graded confidence (e.g. "I am 90 weight to attach to our judgment. Ideally, people should share their judgments to reach more accurate conclusions collectively. Peer-to-peer tools for collective inference could help debunk disinformation and amplify reliable information on social networks, improving democratic discourse. However, individuals fall short of the ideal of well-calibrated probability judgments, and group dynamics can amplify errors and polarize opinions. Here, we connect insights from cognitive science, structured expert judgment, and crowdsourcing to infer the truth of propositions from human probability judgments. In an online experiment, 376 participants judged the probability of each of 1,200 general-knowledge claims for which we have ground truth (451,200 ratings). Aggregating binary judgments by majority vote already exhibits the "wisdom of the crowd"–the superior accuracy of collective inferences relative to individual inferences. However, using continuous probability ratings and accounting for individual accuracy and calibration significantly improves collective inferences. Peer judgment behavior can be modeled probabilistically, and individual parameters capturing each peer's accuracy and miscalibration can be inferred jointly with the claim probabilities. This unsupervised approach can be complemented by supervised methods relying on truth labels to learn models that achieve well-calibrated collective inference. The algorithms we introduce can empower groups of collaborators and online communities to pool their distributed intelligence and jointly judge the probability of propositions with a well-calibrated sense of uncertainty.
In recent years, neuroscience has made significant progress in building large-scale artificial neural network (ANN) models of brain activity and behavior. However, there is no consensus on the most efficient ways to collect data and design experiments to develop the next generation of models. This article explores the controversial opinions that have emerged on this topic in the domain of vision and language. Specifically, we address two critical points. First, we weigh the pros and cons of using qualitative insights from empirical results versus raw experimental data to train models. Second, we consider model-free (intuition-based) versus model-based approaches for data collection, specifically experimental design and stimulus selection, for optimal model development. Finally, we consider the challenges of developing a synergistic approach to experimental design and model building, including encouraging data and model sharing and the implications of iterative additions to existing models. The goal of the paper is to discuss decision points and propose directions for both experimenters and model developers in the quest to understand the brain.
AbstractThe representational geometry of a brain region can be characterized by the distances among neural activity patterns for a set of experimental conditions. Researchers routinely estimate representational distances from brain-activity measurements that either sparsely sample the underlying neural population (e.g. neural recordings) or pool across the activity of many neurons (e.g. fMRI voxels). Here we use theory and simulations to clarify under what circumstances representational distances estimated from brain-activity measurements reflect the representational geometry of the underlying neural population, and what distortions must be expected under other circumstances. We demonstrate that the estimated representational distances are undistorted if single neurons are sampled at random. For voxels that take non-negatively weighted linear combinations, the resulting geometry is linearly distorted, correctly reflecting the population-mean dimension, while downscaling all orthogonal dimensions, for which the averaging cancels a large portion of the signal. Surprisingly, removing the mean from voxel patterns recovers the underlying representational geometry exactly in expectation under idealized conditions. This explains why the correlation distance, the most popular measure of representational dissimilarity in neuroimaging studies, “works” so well, yielding geometries that can appear similar between fMRI and neural recordings. The Euclidean (or Mahalanobis) distance computed after removing the mean of each pattern (without normalizing its variance) is an attractive alternative to the correlation distance in that it corrects for the inflated relative contribution of the population-mean dimension, while avoiding the drawback of the correlation distance: it can be large for confusable low-norm patterns, failing to reflect decodability. Our results demonstrate that measured representational distances reflect the neural representational geometry when (1) single neurons are sampled at random or (2) the weights with which the measured responses sample the neurons are drawn i.i.d. and (2a) the weights are drawn from a zero-mean distribution or (2b) the population mean is the same for all conditions or (2c) the mean is removed from each estimated pattern. We discuss practical implications for analyses of neural representational geometries.