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Salah E. Abdel-Ghany*, Michael Hamilton*, Jennifer L. Jacobi, Peter Ngam, Nicholas Devitt,
Faye Schilkey, Asa Ben-Hur, and Anireddy SN Reddy. A survey of the sorghum transcriptome
using single-molecule long reads. Nature Communications 7, 2016. (*Joint first authors).
Yuxiang Jiang et al. An expanded evaluation of protein function prediction methods shows an
improvement in accuracy. Genome Biology 17:184, 2016.
Thomas Harrison, Dan Sloan, Jaime Ruiz, Asa Ben-Hur, and Christina Boucher. aPPRove: an
HMM-based method for accurate prediction of RNA-pentatricopeptide repeat protein binding
events. PLOS ONE, 11(8), 2016.
2015 Indika Kahanda, Chris Funk, Fahad Ullah, Karin Verspoor and Asa Ben-Hur. A close look at
automated protein function prediction evaluation protocols. GigaScience 4:41, 2015.
Indika Kahanda, Christopher Funk, Karin Verspoor, and Asa Ben- Hur. PHENOstruct: Prediction
of human phenotype ontology terms using heterogeneous data sources. F1000Research 4(259),
2015.
Christopher Funk, Indika Kahanda, Asa Ben-Hur and Karin Verspoor. Evaluating a variety
of text-mined features for automatic protein function prediction with GOstruct. Journal of
Biomedical Semantics 6:1, 2015.
Upulee Kanewala, James Bieman, and Asa Ben-Hur. Predicting Metamorphic Relations for
Testing Scientific Software: A Machine Learning Approach Using Graph Kernels. Software Testing,
Verification and Reliability, 2015.
Denghui Xing, Yajun Wang, Michael Hamilton, Asa Ben-Hur and Anireddy S.N. Reddy.
Transcriptome-wide identification of RNA targets of Arabidopsis Serine/Arginine-Rich45 uncovers
the unexpected roles of this RNA binding protein in RNA processing. The Plant Cell,
2015.
研究兴趣
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Nature Microbiologyno. 3 (2024): 595-613
Ahmed Daoud,Asa Ben-Hur
biorxiv(2024)
Wiley interdisciplinary reviews. RNAno. 2 (2024): e1838-e1838
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Plant phenome journalno. 1 (2023): n/a-n/a
Frontiers in Bioinformatics (2023): 1198218
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Genome Biologyno. 1 (2023): 1-16
CELL REPORTS MEDICINEno. 12 (2023): 101313-101313
biorxiv(2022)
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