Michael Brudno

Department of Computer Science, Stanford University, Stanford, California 94305, USA

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Papers42 papers

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GenomeVISTA--an integrated software package for whole-genome alignment and visualization

Alexandre Poliakov,Justin Foong,Michael Brudno,Inna Dubchak

BIOINFORMATICS, no. 18 (2014): 2654-2655

Cited by5WOSEIBibtex

SCARPA

Nilgun Donmez,Michael Brudno

Bioinformatics, no. 4 (2013): 428-434

Cited by1EIBibtex

SCARPA: scaffolding reads with practical algorithms

Nilgun Donmez,Michael Brudno

BIOINFORMATICS, no. 4 (2013): 428-434

Cited by57WOSEIBibtex

Hapsembler: an assembler for highly polymorphic genomes

Nilgun Donmez,Michael Brudno

RECOMB, pp.38-52, (2011)

Cited by41EIBibtex

MoGUL: detecting common insertions and deletions in a population

Seunghak Lee,Eric Xing,Michael Brudno

RECOMB, (2010): 357-368

Cited by19EIBibtex

PSB 2010 Tutorial: Personal Genomics

Michael Brudno,Evan E. Eichler,Maricel G. Kann,S. Cenk Sahinalp

(2010)

Bibtex

Conservation of core gene expression in vertebrate tissues

Esther T Chan,Gerald T Quon,Gordon Chua,Tomas Babak,Miles Trochesset,Ralph A Zirngibl,Jane Aubin,Michael J H Ratcliffe,Andrew Wilde,Michael Brudno,Quaid D Morris,Timothy R Hughes

Journal of Biology, no. 3 (2009): 33-33

Cited by150WOSBibtex

MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions

Seunghak Lee,Fereydoun Hormozdiari,Can Alkan,Michael Brudno

NATURE METHODS, no. 7 (2009): 473-474

Cited by145WOSNATUREBibtex

Polymorphism due to multiple amino acid substitutions at a codon site within Ciona savignyi

Nilgun Donmez,Georgii A Bazykin,Michael Brudno,Alexey S Kondrashov

GENETICS, no. 2 (2009): 685.0-690

Cited by9WOSBibtex

Multiple whole-genome alignments without a reference organism

Inna Dubchak,Alexander Poliakov,Andrey Kislyuk,Michael Brudno

GENOME RESEARCH, no. 4 (2009): 682-689

Cited by81WOSBibtex

A robust framework for detecting structural variations in a genome

Seunghak Lee,Elango Cheran,Michael Brudno

ISMB, no. 13 (2008): i59-67

Cited by75WOSEIBibtex

Using UHTS to detect somatic mutations

Michael Brudno, Manhong Dai, J H Wilson,Stanley J Watson, Fan Meng P,Fabio De Bona,Stephan Ossowski,Korbinian Schneeberger, Stephen M Rumble, Vladimir Yanovsky, Michael Brudno P, Yaniv Erlich

(2008)

Bibtex

A mixture model for the evolution of gene expression in non-homogeneous datasets

Gerald Quon,Yee Whye Teh,Esther T Chan,Timothy R. Hughes,Michael Brudno,Quaid Morris

NIPS, pp.1297-1304, (2008)

Cited by5EIBibtex

DOI: 10.1093/bioinformatics/btg181 AGenDA: homology-based gene prediction

Leila Taher,Oliver Rinner,Saurabh K Garg, Er Sczyrba,Michael Brudno,Serafim Batzoglou,Burkhard Morgenstern

(2008)

Bibtex

Extensive parallelism in protein evolution

Georgii A Bazykin,Fyodor A Kondrashov,Michael Brudno,Alexander Poliakov,Inna Dubchak,Alexey S Kondrashov

Biology Direct, no. 1 (2007): 20-20

Cited by37WOSBibtex

polymorphic Ciona savignyi genome

Kerrin S Small,Michael Brudno,Matthew M Hill,Arend Sidow

(2007)

Bibtex

Multiple whole genome alignments and novel biomedical applications at the VISTA portal

Michael Brudno,Alexander Poliakov,Simon Minovitsky,Igor Ratnere,Inna Dubchak

NUCLEIC ACIDS RESEARCH, no. SUPnan (2007): W669-W674

Cited by33WOSEIBibtex

Comparative Genomics of Transcriptional Regulation in Yeasts and its Application to Identification of a Candidate Alpha-isopropylmalate Transporter

Galina Yu. Kovaleva,Georgii A. Bazykin,Michael Brudno,Mikhail S. Gelfand

J. Bioinformatics and Computational Biology, no. 5 (2006): 981-998

Cited by6EIWOSBibtex

Probabilistic consistency - based multiple sequence alignment

C. B. Do,S. P. Mahabhashyam,M. Brudno,S. Batzoglou

Cited by4Bibtex

Chaining Algorithms for Alignment of Draft Sequence

Mukund Sundararajan,Michael Brudno,Kerrin Small,Arend Sidow,Serafim Batzoglou

ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS, (2004): 326-+

Cited by14EIBibtex

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Michael BrudnoBinding

Papers42 papers

Michael Brudno