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Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation Antimicrobial Resistance Prediction in PATRIC and RAST PATtyFams: Protein families for the microbial genomes in the PATRIC database RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes Enabling Comparative Modeling of Closely-related Genomes: Example Genus Brucella The genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes In search of genome annotation consistency: solid gene clusters and how to use them Similarity of genes horizontally acquired by Escherichia coli and Salmonella enterica is evidence of a supraspecies pangenome Characterizing the native codon usages of a genome: an axis projection approach Modal Codon Usage: Assessing the Typical Codon Usage of a Genome Isolation of Predation-Deficient Mutants of Bdellovibrio bacteriovorus by Using Transposon Mutagenesis The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
Project
PATRIC RAST The SEED
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation Antimicrobial Resistance Prediction in PATRIC and RAST PATtyFams: Protein families for the microbial genomes in the PATRIC database RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes Enabling Comparative Modeling of Closely-related Genomes: Example Genus Brucella The genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes In search of genome annotation consistency: solid gene clusters and how to use them Similarity of genes horizontally acquired by Escherichia coli and Salmonella enterica is evidence of a supraspecies pangenome Characterizing the native codon usages of a genome: an axis projection approach Modal Codon Usage: Assessing the Typical Codon Usage of a Genome Isolation of Predation-Deficient Mutants of Bdellovibrio bacteriovorus by Using Transposon Mutagenesis The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
Project
PATRIC RAST The SEED
研究兴趣
论文共 81 篇作者统计合作学者相似作者
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Justin C. Podowski, Sara Forrester,Dionysios A. Antonopoulos, Jennifer L. Steeb,Angela D. Kent,James J. Davis, Daniel S. Schabacker
Journal of Radioanalytical and Nuclear Chemistrypp.1-11, (2024)
CoRR (2023)
引用0浏览0EI引用
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M. Nguyen,Zachary C. Elmore, Clay Ihle,Francesco S. Moen,Adam Slater, Benjamin N. Turner,Bruce Parrello,Aaron A. Best,James J. Davis
MSystems (2023)
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Maxim Zvyagin,Alexander Brace,Kyle Hippe,Yuntian Deng,Bin Zhang, Cindy Orozco Bohorquez,Austin Clyde,Bharat Kale,Danilo Perez-Rivera,Heng Ma,Carla M. Mann, Michael Irvin,
biorxiv(2023)
Marcus Nguyen,Zachary Elmore, Clay Ihle,Francesco S. Moen,Adam D. Slater, Benjamin N. Turner,Bruce Parrello,Aaron A. Best,James J. Davis
biorxiv(2023)
Marcus Nguyen,Zachary Elmore, Clay Ihle,Francesco S Moen,Adam D Slater, Benjamin N Turner,Bruce Parrello,Aaron A Best,James J Davis
mSystems (2023)
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M. Nguyen,Zachary C. Elmore, Clay Ihle,Francesco S. Moen,Adam Slater, Benjamin N. Turner,Bruce Parrello,Aaron A. Best,James J. Davis
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Kurt Jason Vandegrift,Michele Yon,Meera Surendran Nair,Abhinay Gontu, Saranya Amirthalingam,Sabarinath Neerukonda,Ruth H. Nissly,Shubhada K. Chothe,Padmaja Jakka,Lindsey LaBella,Nicole Levine, Sophie Rodriguez,
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