Sergei Maslov

Department of Physics|Brookhaven National Laboratory

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Papers164 papers

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Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence

Liao Chen, Wang Tong,Maslov Sergei, Xavier Joao B.

PLoS computational biology, no. 8 (2020): 1-45

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Ecology-guided prediction of cross-feeding interactions in the human gut microbiome

Akshit Goyal, Tong Wang, Veronika Dubinkina,Sergei Maslov

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Ligation of random oligomers leads to emergence of autocatalytic sequence network

Patrick W. Kudella,Alexei V. Tkachenko,Sergei Maslov,Dieter Braun

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Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks

Ananthan Nambiar, Maeve Elizabeth Heflin, Simon Liu, Sergei Maslov,Mark Hopkins, Anna Ritz

BCB, pp.1-16, (2020)

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Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations

Derek Ping, Tong Wang, David T Fraebel,Sergei Maslov,Kim Sneppen,Seppe Kuehn

The ISME journal, pp.1-12, (2020)

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Phages associated with horses provide new insights into the dominance of lateral gene transfer in virulent bacteriophages evolution in natural systems

Vladislav V. Babenko,Alla K. Golomidova,Pavel A. Ivanov,Maria A. Letarova,Eugene E. Kulikov,Alexander I. Manolov,Nikolai S. Prokhorov, Elena S. Kostrukova, Daria M. Matyushkina, Alexey G. Prilipov,Sergei Maslov, Ilya S. Belalov

bioRxiv, pp.542787-26, (2019)

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The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification

Shai Pilosof, Sergio A. Alcala-Corona, Tong Wang, Ted Kim,Sergei Maslov,Rachel Whitaker,Mercedes Pascual

Nature ecology & evolution, no. 12 (2019): 1-48

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Multistability and regime shifts in microbial communities explained by competition for essential nutrients

Veronika Dubinkina, Yulia Fridman, Parth Pratim Pandey,Sergei Maslov

eLife, (2019): 1-25

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Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control

Sergei Maslov,Kim Sneppen

mSystems, no. 6 (2019): 1-15

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Collapse and contingency in phage infections of migrating bacterial populations

Derek Ping, Tong Wang, David Fraebel,Sergei Maslov,Kim Sneppen,Seppe Kuehn

Bulletin of the American Physical Society, (2019)

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Evidence for a multi-level trophic organization of the human gut microbiome

Tong Wang, Akshit Goyal, Veronika Dubinkina,Sergei Maslov

bioRxiv, no. 12 (2019): 603365-24

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What’s love got to do with it? Stable marriage in microbial ecosystems limited by two essential nutrients

Sergei Maslov, Veronika Dubinkina, Yulia Fridman, Parth Pratim Pandey

Bulletin of the American Physical Society, (2019)

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Thermodynamic constraints on cross-feeding in bacterial population

Tong Wang, Chen Liao,Sergei Maslov

Bulletin of the American Physical Society, (2019)

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Multiple stable states in microbial communities explained by the stable marriage problem

Akshit Goyal, Veronika Dubinkina,Sergei Maslov

The ISME journal, pp.1-24, (2018)

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Alternative stable states in a model of microbial community limited by multiple essential nutrients

Veronika Dubinkina, Yulia Fridman, Parth Pandey,Sergei Maslov

bioRxiv, pp.439547-27, (2018)

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Hitchhiking, collapse and contingency in phage infections of migrating bacterial populations

Derek Ping, Tong Wang, David T. Fraebel,Sergei Maslov,Kim Sneppen,Seppe Kuehn

bioRxiv, pp.378596-10, (2018)

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Microbial Community Assembly Rules Emergent from the Stable Marriage Problem

Veronika Dubinkina, Akshit Goyal,Sergei Maslov

Bulletin of the American Physical Society, (2018)

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KBase: The United States Department of Energy Systems Biology Knowledgebase

Adam P Arkin,Robert W Cottingham, Christopher S Henry,Nomi L Harris,Rick L Stevens,Sergei Maslov,Paramvir Dehal,Doreen Ware,Fernando Perez, Shane Canon, Michael W Sneddon, Matthew L Henderson

Nature biotechnology, no. 7 (2018): 566-569

Cited by15WOSBibtex

Onset of natural selection in populations of autocatalytic heteropolymers

Alexei V Tkachenko,Sergei Maslov

The Journal of chemical physics, no. 13 (2018): 134901

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Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems

Akshit Goyal,Sergei Maslov

Physical review letters, no. 15 (2018): 158102-8

Cited by6WOSBibtex

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Papers164 papers

Sergei Maslov