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Nomi L. Harris

FlyBase-Berkeley, University of California, Berkeley, CA 94720-3200, USA|Department of Genome Sciences, Lawrence Berkeley National Laboratory, One Cyclotron Road Mailstop 64-121, Berkeley, CA 94720, USA

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The Human Phenotype Ontology in 2021

Sebastian Köhler, Michael Gargano,Nicolas Matentzoglu, Leigh C Carmody, David Lewis-Smith,Nicole A Vasilevsky, Daniel Danis, Ganna Balagura,Gareth Baynam, Amy M Brower,Tiffany J Callahan,Christopher G Chute

Nucleic acids research, (2020)

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KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

Justin T Reese, Deepak Unni,Tiffany J Callahan, Luca Cappelletti, Vida Ravanmehr,Seth Carbon, Kent A Shefchek, Benjamin M Good,James P Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu

Patterns (New York, N.Y.), pp.100155-100155, (2020)

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KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

Justin Reese,Deepak Unni,Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr,Seth Carbon, Tommaso Fontana, Hannah Blau,Nicolas Matentzoglu,Nomi L. Harris,Monica C. Munoz-Torres,Peter N. Robinson

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The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

Kent A Shefchek,Nomi L Harris, Michael Gargano,Nicolas Matentzoglu, Deepak Unni,Matthew Brush, Daniel Keith,Tom Conlin,Nicole Vasilevsky, Xingmin Aaron Zhang,James P Balhoff, Larry Babb

Nucleic acids research, no. D1 (2020)

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The 21st annual Bioinformatics Open Source Conference (BOSC 2020, part of BCC2020)

Nomi L Harris,Peter J A Cock,Christopher J Fields,Karsten Hokamp, Jessica Maia,Monica Munoz-Torres, Morgan Taschuk, Yo Yehudi

F1000Research, (2020): 1160

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ROBOT: A Tool for Automating Ontology Workflows

Rebecca C Jackson, James P Balhoff, Eric Douglass,Nomi L Harris,Christopher J Mungall,James A Overton

BMC Bioinformatics, no. 1 (2019): 1-10

Cited by10WOSEIBibtex

BOSC 2019, the 20th annual Bioinformatics Open Source Conference

Nomi L. Harris,Peter J.A. Cock,Christopher J. Fields, Bastian Greshake Tzovaras, Michael Heuer,Karsten Hokamp,Monica Munoz-Torres, Alexander Peltzer,Bastian Rieck,Heather Wiencko, Yo Yehudi

F1000Research, (2019): 2132

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How many rare diseases are there

Melissa Haendel,Nicole Vasilevsky, Deepak Unni, Cristian Bologa,Nomi Harris, Heidi Rehm, Ada Hamosh,Gareth Baynam,Tudor Groza,Julie McMurry,Hugh Dawkins,Ana Rath

(2019)

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uPheno 2: Framework for standardised representation of phenotypes across species

Nico Matentzoglu,David Osumi-Sutherland,James P. Balhoff,Susan Bello,Yvonne Bradford, Leigh Cardmody, Chris Grove,Midori A. Harris,Nomi Harris,Sebastian Köhler,Julie McMurry,Chris Mungall

F1000Research, (2019)

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Efficient curation of genome annotations through collaboration with Apollo

Nathan Dunn, Deepak Unni, Colin Diesh,Robert Buels,Nomi Harris,Suzanna E. Lewis,Ian Holmes

F1000Research, (2019)

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Visual refinement of genome annotations with Apollo in a community environment

Nathan Dunn, Deepak Unni, Colin Diesh, Helena Rasche,Anthony Bretaudeau,Nomi Harris,Ian Holmes

F1000Research, (2019)

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Apollo: Democratizing genome annotation

Nathan A Dunn, Deepak R Unni, Colin Diesh,Monica Munoz-Torres,Nomi L Harris, Eric Yao, Helena Rasche,Ian H Holmes,Christine G Elsik,Suzanna E Lewis

PLoS Computational Biology, no. 2 (2019): 512376-24

WOSEIBibtex

Reconstruction and Analysis of Central Metabolism in Microbes

Janaka N Edirisinghe, José P Faria,Nomi L Harris, Benjamin H Allen,Christopher S Henry

Methods in molecular biology (Clifton, N.J.), (2018): 111-129

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Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources

Sebastian Köhler, Leigh Carmody,Nicole Vasilevsky,Julius O B Jacobsen, Daniel Danis, Jean-Philippe Gourdine, Michael Gargano,Nomi L Harris,Nicolas Matentzoglu,Julie A McMurry,David Osumi-Sutherland, Valentina Cipriani

Nucleic acids research, (2018)

Cited by145WOSEIBibtex

KBase: The United States Department of Energy Systems Biology Knowledgebase

Adam P Arkin,Robert W Cottingham, Christopher S Henry,Nomi L Harris,Rick L Stevens,Sergei Maslov,Paramvir Dehal,Doreen Ware,Fernando Perez, Shane Canon, Michael W Sneddon, Matthew L Henderson

Nature biotechnology, no. 7 (2018): 566-569

Cited by15WOSBibtex

The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018)

Nomi L. Harris,Heather L. Wiencko,Brad Chapman,Peter J. A. Cock,Karsten Hokamp,Hilmar Lapp,Christopher J. Fields, Bastian Greshake Tzovaras

F1000Research, (2018): 1309

Bibtex

Using KBase to Assemble and Annotate Prokaryotic Genomes

Benjamin Allen,Meghan Drake,Nomi Harris,Tarah Sullivan

Current protocols in microbiology, (2017): 1E.13.1-1E.13.18

Cited by2WOSBibtex

The 2016 Bioinformatics Open Source Conference (BOSC)

Nomi L. Harris,Peter J. A. Cock,Brad Chapman,Christopher J. Fields,Karsten Hokamp,Hilmar Lapp,Monica Munoz-Torres,Heather L. Wiencko

F1000Research, (2016): 1858

Bibtex

The 2015 Bioinformatics Open Source Conference (BOSC 2015)

Nomi L. Harris,Peter J. A. Cock,Hilmar Lapp,Brad Chapman,Rob Davey,Christopher Fields,Karsten Hokamp,Monica C. Munoz-Torres

PLoS Computational Biology, no. 2 (2016)

Cited by1EIWOSBibtex

The Bioinformatics Open Source Conference (BOSC) 2013

Nomi L. Harris,Peter J. A. Cock,Brad A. Chapman,Jeremy Goecks,Hans-Rudolf Hotz,Hilmar Lapp

BIOINFORMATICS, no. 2 (2015): 299-300

Cited by3EIWOSBibtex

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