Paramvir S. Dehal

Virtual Institute for Microbial Stress and Survival|Lawrence Berkeley National Laboratory

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KBase: The United States Department of Energy Systems Biology Knowledgebase

Adam P Arkin,Robert W Cottingham, Christopher S Henry,Nomi L Harris,Rick L Stevens,Sergei Maslov,Paramvir Dehal,Doreen Ware,Fernando Perez, Shane Canon, Michael W Sneddon, Matthew L Henderson

Nature biotechnology, no. 7 (2018): 566-569

Cited by15WOSBibtex

The DOE Systems Biology Knowledgebase (KBase)

Adam P. Arkin,Rick Stevens, Robert W. Cottingham, Sergei Maslov, Christopher S. Henry,Paramvir Dehal,Doreen Ware, Fernando Perez, Nomi L. Harris, Shane Canon, Michael W Sneddon, Matthew L Henderson

bioRxiv, pp.096354-21, (2016)

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Comparative Metagenomic Analysis Using Phylogenetic Trees

Paramvir S Dehal

(2014)

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ESPP Computational Core Overview

Paramvir S Dehal

(2014)

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Comparative Sequencing and Analysis of Multiple Desulfovibrio and Other Sulfate Reducing Species

Paramvir S Dehal

(2014)

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MicrobesOnline: an integrated portal for comparative and functional genomics

Paramvir S Dehal

(2013)

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MetaMicrobesOnline: phylogenomic analysis of microbial communities

Dylan Chivian,Paramvir S Dehal,Keith Keller,Adam P Arkin

Nucleic Acids Research, no. Database issue (2013): D648-54

Cited by12WOSEIBibtex

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics

Pavel S. Novichkov,Thomas S. Brettin,Elena S. Novichkova,Paramvir S. Dehal,Adam P. Arkin,Inna Dubchak,Dmitry A. Rodionov

Nucleic Acids Research, no. Web-Server-Issue (2012): 604-608

Cited by17EIWOSBibtex

Conservation of Modules but not Phenotype in Bacterial Response to Environmental Stress

Sonia Timberlake,Marcin P Joachimiak,Dominique C Joyner,Romy Chakraborty,Jason K Baumohl,Paramvir S Dehal,Adam P Arkin,Terry C Hazen,Eric J Alm

(2010)

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Genetic Adaptation to Salt Stress in Experimental Evolution of Desulfovibrio vulgaris Hildenborough

Aifen Zhou,Kristina L Hillesland,Zhili He,Marcin P Joachimiak,Grant M Zane,Paramvir S Dehal,Adam P Arkin,David A Stahl,Judy D Wall,Terry C Hazen, Jizhong Zhou,Edward E K Baidoo

(2010)

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Mapping the Two-component Regulatory Networks in Desulfovibrio vulgaris

Lara Rajeev,Eric G Luning,Paramvir S Dehal,Marcin P Joachimiak,Aindrila Mukhopadhyay

(2010)

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Reconstruction of Gene Networks of Iron Response in Shewanella oneidensis

Yunfeng Yang,Daniel P Harris,Feng Luo,Marcin P Joachimiak,Liyou Wu,Paramvir S Dehal,Jan Arge Jacobsen,Zamin K Yang,Haichun Gao,Adam P Arkin,Anthony V Palumbo,Jizhong Zhou

BMC Genomics, (2009)

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Genome sequences of two Phytophthora species responsible for Sudden Oak Death and Soybean Root Rot provide novel insights into their evolutionary origins and mechanisms of pathogenesis

Brett M Tyler, S M Tripathi,Andrea Aerts,Douda Bensasson,Paramvir S Dehal,Inna Dubchak,Matteo Garbelotto,Mark Gijzen, W Huang, Kelly Ivors,Rays Jiang,Sophien Kamoun

(2009)

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MicrobesOnline: an integrated portal for comparative functional genomics

Marcin P. Joachimiak,Katherine H. Huang,Eric J. Alm,Dylan Chivian,Paramvir S. Dehal,Y. Wayne Huang,Janet Jacobsen,Keith Keller,Morgan N. Price, Adam P. Arkin,Inna L. Dubchak, Eric J. Alm

Cited by6Bibtex

GTL Develop Methods and Concepts Needed to Achieve a Systems-Level Understanding of Microbial Cell and Community Function, Regulation, and Dynamics The Virtual Institute of Microbial Stress and Survival: An Overview of

C B Abulencia,Eric J Alm, Gary Anderson,Edward E K Baidoo,Peter I Benke,Eoin L Brodie,Romy Chakraborty,Swapnil R Chhabra,Gabriela S Chirica,Dylan Chivian, Michael J Cipriano, M E Clark

(2008)

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Environmental genomics reveals a single-species ecosystem deep within Earth

Dylan Chivian,Eoin L Brodie,Eric J Alm,David E Culley,Paramvir S Dehal,Todd Z DeSantis,Thomas M Gihring,Alla Lapidus,Li-Hung Lin,Stephen R Lowry,Duane P Moser, Paul M Richardson

Science (New York, N.Y.), no. 5899 (2008): 275-278

Cited by312WOSSCIENCEBibtex

Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli

Morgan N Price,Paramvir S Dehal,Adam P Arkin

Genome Biology, no. 1 (2008): R4-R4

Cited by122WOSBibtex

Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough

Aindrila Mukhopadhyay,Alyssa M Redding,Marcin P Joachimiak,Adam P Arkin,Sharon E Borglin,Paramvir S Dehal,Romy Chakraborty,Jil T Geller,Terry C Hazen,Qiang He,Dominique C Joyner,Vincent J J Martin

Journal of bacteriology, no. 16 (2007): 5996-6010

Cited by74WOSBibtex

Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes

Morgan N. Price,Paramvir S. Dehal,Adam P. Arkin

PLoS Computational Biology, no. 9 (2007)

Cited by98EIWOSBibtex

Genomic sequence of the xylose fermenting, insect-inhabiting yeast, Pichia stipitis

Thomas W Jeffries,Igor V Grigoriev,Jane Grimwood,Jose M Laplaza,Andrea Aerts,Asaf Salamov,Jeremy Schmutz,Erika Lindquist,Paramvir S Dehal,Harris Shapiro,Yongsu Jin,Volkmar Passoth

(2007)

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Papers28 papers

Paramvir S. Dehal