Robert D. Finn

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK

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Papers114 papers

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Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC

Paul Saary, Alex L Mitchell,Robert D Finn

Genome biology, no. 1 (2020): 244-244

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Rfam 14: expanded coverage of metagenomic, viral and microRNA families

Ioanna Kalvari,Eric P Nawrocki, Nancy Ontiveros-Palacios,Joanna Argasinska, Kevin Lamkiewicz,Manja Marz,Sam Griffiths-Jones,Claire Toffano-Nioche,Daniel Gautheret, Zasha Weinberg,Elena Rivas,Sean R Eddy

Nucleic acids research, (2020)

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Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia Arighi,Alex Bateman,Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel

Briefings in bioinformatics, (2020)

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Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics

Muzaffer Arıkan, Alex L Mitchell,Robert D Finn, Filiz Gürel

Journal of food science, (2020)

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Pfam: The protein families database in 2021

Jaina Mistry, Sara Chuguransky, Lowri Williams,Matloob Qureshi,Gustavo A Salazar,Erik L L Sonnhammer,Silvio C E Tosatto, Lisanna Paladin, Shriya Raj,Lorna J Richardson,Robert D Finn,Alex Bateman

Nucleic acids research, (2020)

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Computational Strategies to Combat COVID 19: Useful Tools to Accelerate SARS CoV 2 and Coronavirus Research

Preprints.org, (2020)

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Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli

Yong Wang, Jiao-Mei Huang, Ying-Li Zhou, Alexandre Almeida,Robert D Finn,Antoine Danchin, Li-Sheng He

BMC Genomics, no. 1 (2020): 1-12

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COVID-19 pandemic reveals the peril of ignoring metadata standards

Lynn M Schriml, Maria Chuvochina,Neil Davies, Emiley A Eloe-Fadrosh,Robert D Finn,Philip Hugenholtz,Christopher I Hunter, Bonnie L Hurwitz,Nikos C Kyrpides,Folker Meyer,Ilene Karsch Mizrachi,Susanna-Assunta Sansone

Scientific data, no. 1 (2020): 188

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A unified catalog of 204,938 reference genomes from the human gut microbiome

Alexandre Almeida,Stephen Nayfach, Miguel Boland, Francesco Strozzi, Martin Beracochea, Zhou Jason Shi,Katherine S Pollard, Ekaterina Sakharova, Donovan H Parks,Philip Hugenholtz, Nicola Segata,Nikos C Kyrpides

Nature biotechnology, pp.1-10, (2020)

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Exploring Non-Coding RNAs in RNAcentral

Blake A Sweeney, Arina A Tagmazian, Carlos E Ribas,Robert D Finn,Alex Bateman,Anton I Petrov

Current protocols in bioinformatics, no. 1 (2020)

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A new genomic blueprint of the human gut microbiota

Alexandre Almeida,Alex L Mitchell, Miguel Boland,Samuel C Forster,Gregory B Gloor, Aleksandra Tarkowska,Trevor D Lawley,Robert D Finn

Nature, pp.1, (2019)

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A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

Alexandre Almeida,Stephen Nayfach, Miguel Boland, Francesco Strozzi, Martin Beracochea, Zhou Jason Shi,Katherine S. Pollard,Donovan H. Parks,Philip Hugenholtz,Nicola Segata,Nikos C. Kyrpides,Robert D. Finn

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Microbial community drivers of PK/NRP gene diversity in selected global soils

Chiara Borsetto,Gregory C A Amos, Ulisses Nunes da Rocha,Alex L Mitchell,Robert D Finn,Rabah Forar Laidi, Carlos Vallin,David A Pearce,Kevin K Newsham,Elizabeth M H Wellington

Microbiome, no. 1 (2019): 1-11

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Microbial abundance, activity and population genomic profiling with mOTUs2

Alessio Milanese,Daniel R Mende, Lucas Paoli,Guillem Salazar, Hans-Joachim Ruscheweyh,Miguelangel Cuenca,Pascal Hingamp,Renato Alves,Paul I Costea,Luis Pedro Coelho,Thomas S B Schmidt, Alexandre Almeida

Nature communications, no. 1 (2019): 1014-1014

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Annotating the complex cellular orchestration of protein functions using Genome Properties

Lorna J. Richardson,Gustavo A. Salazar,Granger G. Sutton, David R. Haft,Robert D. Finn

F1000Research, (2019)

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Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies

Paul P Gardner, Renee J Watson,Xochitl C Morgan,Jenny L Draper,Robert D Finn,Sergio E Morales,Matthew B Stott

PeerJ, (2019)

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RNAcentral: a hub of information for non coding RNA sequences

Blake A Sweeney,Anton I Petrov, Boris Burkov,Robert D Finn,Alex Bateman,Maciej Szymanski,Wojciech M Karlowski,Jan Gorodkin,Stefan E Seemann,Jamie J Cannone,Robin R Gutell, Petra Fey

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Pfam and MGnify: using metagenomics to improve the Pfam coverage of microbial sequence space

Sara El-Gebali,Jaina Mistry,Simon C. Potter,Robert D. Finn

F1000Research, (2019)

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MGnify: the microbiome analysis resource in 2020

Alex L Mitchell, Alexandre Almeida, Martin Beracochea, Miguel Boland, Josephine Burgin,Guy Cochrane, Michael R Crusoe, Varsha Kale,Simon C Potter,Lorna J Richardson, Ekaterina Sakharova,Maxim Scheremetjew

Nucleic acids research, (2019)

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Integrating Genome3D structural annotations and predicted secondary structures in InterPro 7

Typhaine Paysan-Lafosse, Matthias Blum,Matloob Qureshi,Gustavo A. Salazar,C Orengo,Ian Sillitoe,Robert D. Finn

F1000Research, (2019)

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Robert D. FinnBinding

Papers114 papers

Robert D. Finn