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Stefan E. Seemann

Division of Genetics and Bioinformatics, IBHV, University of Copenhagen, Grønnegårdsvej 3, DK-1870 Frederiksberg, Denmark|Bioinformatics Group, Department of Computer Science, University of Leipzig, Germany

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RNAcentral: a hub of information for non coding RNA sequences

Blake A Sweeney,Anton I Petrov, Boris Burkov,Robert D Finn,Alex Bateman,Maciej Szymanski,Wojciech M Karlowski,Jan Gorodkin,Stefan E Seemann,Jamie J Cannone,Robin R Gutell, Petra Fey

Cited by50Bibtex

Sandwich cortical lamination and single-cell analysis decodes the developing spatial processing system

Yong Liu, Tobias Bergmann, Julie Lee, Ulrich Pfisterer, Louis-Francois Handfield, Yuki Mori, Andrea Asenjo-Martinez, Irene Lisa-Vargas,Stefan E Seemann, Jimmy Tsz Hang Lee, Nikolaos Patikis, Juan Miguel Peralvo Vidal

Bibtex

Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229]

Blake A. Sweeney,Anton I. Petrov, Boris Burkov,Robert D. Finn,Alex Bateman,Maciej Szymanski,Wojciech M. Karlowski,Jan Gorodkin,Stefan E. Seemann,Jamie J. Cannone,Robin R. Gutell,Petra Fey

Nucleic Acids Research, (2019)

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Identification and characterization of novel conserved RNA structures in Drosophila

Rebecca Kirsch,Stefan E Seemann,Walter L Ruzzo,Stephen M Cohen,Peter F Stadler,Jan Gorodkin

BMC genomics, no. 1 (2018): 899

Cited by3WOSBibtex

Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures

Radhakrishnan Sabarinathan,Christian Anthon,Jan Gorodkin,Stefan E Seemann

Genes, no. 12 (2018)

Cited by1WOSBibtex

The identification and functional annotation of RNA structures conserved in vertebrates

Stefan E Seemann,Aashiq H Mirza,Claus Hansen,Claus H Bang-Berthelsen,Christian Garde, Mikkel Christensen-Dalsgaard,Elfar Torarinsson,Zizhen Yao,Christopher T Workman,Flemming Pociot,Henrik Nielsen,Niels Tommerup

Genome research, no. 8 (2017): 1371-1383

Cited by41WOSBibtex

DotAligner: identification and clustering of RNA structure motifs

Martin A Smith,Stefan E Seemann, Xiu Cheng Quek,John S Mattick

Genome biology, no. 1 (2017): 244

Cited by3WOSBibtex

RNAscClust: clustering RNA sequences using structure conservation and graph based motifs

Milad Miladi,Alexander Junge,Fabrizio Costa,Stefan E. Seemann,Jakob Hull Havgaard,Jan Gorodkin,Rolf Backofen

BIOINFORMATICS, no. 14 (2017): 2089-2096

Cited by16EIWOSBibtex

Associating transcription factors and conserved RNA structures with gene regulation in the human brain

Nikolai Hecker,Stefan E Seemann,Asli Silahtaroglu,Walter L Ruzzo,Jan Gorodkin

Scientific reports, no. 1 (2017): 5776-5776

Cited by5WOSBibtex

SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization

Nkerorema Djodji Damas, Michela Marcatti,Christophe Côme, Roland Baumgartner, Helene Maria Gylling, Giulia Maglieri, Carsten Friis Rundsten,Nicolas Rapin,Anders H. Lund,Lise Lotte Christensen,Morten Muhlig Nielsen,Søren Vang

Nature Communications, (2016): 13875

Cited by41WOSNATUREBibtex

Optimizing RNA structures by sequence extensions using RNAcop

Nikolai Hecker,Mikkel Christensendalsgaard,Stefan E Seemann,Jakob H Havgaard,Peter F Stadler,Ivo L Hofacker,Henrik Nielsen,Jan Gorodkin

Nucleic Acids Research, (2015)

Cited by4Bibtex

Quality Assessment of Domesticated Animal Genome Assemblies

Stefan E Seemann,Christian Anthon, Oana Palasca,Jan Gorodkin

Bioinformatics and biology insights, no. Suppl 4 (2015): 49-58

WOSBibtex

Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domain

Zsuzsanna Sükösd,Ebbe S Andersen,Stefan E Seemann, Mads Krogh Jensen, Mathias Hansen,Jan Gorodkin,Jørgen Kjems

Nucleic acids research, (2015)

Cited by17WOSBibtex

The RNAsnp web server: predicting SNP effects on local RNA secondary structure

Radhakrishnan Sabarinathan,Hakim Tafer,Stefan E Seemann,Ivo L Hofacker,Peter F Stadler,Jan Gorodkin

Nucleic Acids Research, no. Web Server issue (2013): W475-9

Cited by58WOSEIBibtex

This supplement contains: Supplementary Information Supplementary Tables S1 to S3

Stefan E Seemann, Andreas Richter,Tanja Gesell

(2013)

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RNAsnp: Efficient Detection of Local RNA Secondary Structure Changes Induced by SNPs: HUMAN MUTATION

Radhakrishnan Sabarinathan,Hakim Tafer,Stefan E Seemann,Ivo L Hofacker,Peter F Stadler,Jan Gorodkin

Human Mutation, (2013)

Cited by17Bibtex

Peter Menzel,Stefan E. Seemann,Jan Gorodkin

Bioinformatics, no. 19 (2012): 2523-2526

EIBibtex

RILogo: visualizing RNA-RNA interactions

Peter Menzel,Stefan E Seemann,Jan Gorodkin

BIOINFORMATICS, no. 19 (2012): 2523-2526

Cited by6WOSEIBibtex

Predicting conserved interactions/structures of multiple alignments of RNA sequences

Stefan E Seemann,Andreas Richter,Peter Menzel, Tanja Gesell, Rolf Backhofen,Jan Gorodkin

(2011)

Bibtex

The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences

Stefan E. Seemann,Peter Menzel,Rolf Backofen,Jan Gorodkin

Nucleic Acids Research, no. Web-Server-Issue (2011): 107-111

Cited by22EIWOSBibtex

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