A Modified Next Reaction Method For Simulating Chemical Systems With Time Dependent Propensities And Delays

JOURNAL OF CHEMICAL PHYSICS, no. 21 (2007)

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Chemical reaction systems with a low to moderate number of molecules are typically modeled as discrete jump Markov processes. These systems are oftentimes simulated with methods that produce statistically exact sample paths such as the Gillespie algorithm or the next reaction method. In this paper we make explicit use of the fact that the...更多

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