Pairwise alignments on the cell processor

Proceedings of the 2006 ACM/IEEE conference on Supercomputing, 2006.

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We are evaluating the performance of bioinformatics applications on the CBE recently developed at IBM. The characteristics of pairwise alignment, critical to bioinformatics applications, makes it uniquely suitable for the Cell processor. We have implemented two different strategies for pairwise alignment on Cell. We analyze the bottleneck...更多

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