A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code.
IPDPS Workshops, pp. 453-462, 2016.
This paper details a distributed memory implementation of Reptile, a scalable and accurate spectrum based error-correction method. Reptile uses both k-mer and adjoining k-mers (called tiles) information along with the quality scores of bases to correct substitution-based errors from next generation sequencing machines. Previous approaches...More
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