K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity

BMC bioinformatics, Volume 18, Issue 1, 2017, Pages 467-467.

Cited by: 5|Views11
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Abstract:

De novo transcriptome assembly is an important technique for understanding gene expression in non-model organisms. Many de novo assemblers using the de Bruijn graph of a set of the RNA sequences rely on in-memory representation of this graph. However, current methods analyse the complete set of read-derived k-mer sequence at once, resulti...More

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