Cross-type Biomedical Named Entity Recognition with Deep Multi-Task LearningEIWOS
摘要
Supplementary data are available at Bioinformatics online.
- 1Ross B. Girshick, Fast R-CNN.ICCV, 2015.
- 3Richard Tzong-Han Tsai, Shih-Hung Wu, Wen-Chi Chou, Yu-Chun Lin, Ding He, Jieh Hsiang, Ting-Yi Sung, Wen-Lian Hsu. Various criteria in the evaluation of biomedical named entity recognition.BMC Bioinformatics, pp. 922006.
- 4
- 5Chih-Hsuan Wei, Hung-Yu Kao, Zhiyong Lu. PubTator: a web-based text mining tool for assisting biocuration.Nucleic Acids Research, pp. W518-22, 2013.
- 6Murat Cokol, Ivan Iossifov, Chani Weinreb, Andrey Rzhetsky. Emergent behavior of growing knowledge about molecular interactions.Nature Biotechnology, 2005.
- 7
- 8Chung-Chi Huang, Zhiyong Lu. Community challenges in biomedical text mining over 10 years: success, failure and the future.Briefings in Bioinformatics, pp. 132-144, 2016.
- 9Boya Xie, Qin Ding, Hongjin Han, Di Wu. miRCancer: a microRNA-cancer association database constructed by text mining on literature.Bioinformatics, pp. 638-644, 2013.
- 12Tomas Mikolov, Ilya Sutskever, Kai Chen, Greg Corrado, Jeffrey Dean. Distributed Representations of Words and Phrases and their Compositionality.neural information processing systems, pp. 3111-3119, 2013.
- 13Larry Smith, Lorraine K Tanabe, Rie Johnson nee Ando, Cheng-Ju Kuo, I-Fang Chung, Chun-Nan Hsu, Yu-Shi Lin, Roman Klinger, Christoph M Friedrich, Kuzman Ganchev, Manabu Torii, Hongfang Liu, Barry Haddow, Craig A Struble, Richard J Povinelli, Andreas Vlachos, William A Baumgartner Jr, Lawrence Hunter, Bob Carpenter, Richard Tzong-Han Tsai, Hong-Jie Dai, Feng Liu, Yifei Chen, Chengjie Sun, Sophia Katrenko, Pieter Adriaans, Christian Blaschke, Rafael Torres, Mariana Neves, Preslav Nakov, Anna Divoli, Manuel Maña-López, Jacinto Mata, W John Wilbur. Overview of BioCreative II gene mention recognition.Genome biology, pp. S2-S2, 2008.
- 14Yanan Lu, Donghong Ji, Xiaoyuan Yao, Xiaomei Wei, Xiaohui Liang. CHEMDNER system with mixed conditional random fields and multi-scale word clustering.J. Cheminformatics, pp. S4-S4, 2015.
- 15
- 16Damian Szklarczyk, Alberto Santos, Christian von Mering, Lars Juhl Jensen, Peer Bork, Michael Kuhn 0004. STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data.Nucleic Acids Research, pp. 380-384, 2016.
- 17Guillaume Lample, Miguel Ballesteros, Sandeep Subramanian, Kazuya Kawakami, Chris Dyer. Neural Architectures for Named Entity Recognition.HLT-NAACL, 2016.
- 18Robert Leaman, Zhiyong Lu. TaggerOne: joint named entity recognition and normalization with semi-Markov Models.Bioinformatics, pp. 2839-2846, 2016.
- 20Damian Szklarczyk, John H. Morris, Helen Cook, Michael Kuhn, Stefan Wyder, Milan Simonovic, Alberto Santos, Nadezhda T. Doncheva, Alexander Roth, Peer Bork, Lars Juhl Jensen, Christian von Mering. The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.Nucleic Acids Research, pp. D362-D368, 2017.
- 21Maryam Habibi, Leon Weber, Mariana L. Neves, David Luis Wiegandt, Ulf Leser. Deep learning with word embeddings improves biomedical named entity recognition.Bioinformatics, pp. i37-i48, 2017.
- 22Crichton Gamal, Pyysalo Sampo, Chiu Billy, Korhonen Anna. A neural network multi-task learning approach to biomedical named entity recognition.BMC Bioinformatics, pp. 368-368, 2017.
- 23Liyuan Liu, Jingbo Shang, Frank F. Xu, Xiang Ren, Huan Gui, Jian Peng, Jiawei Han. Empower Sequence Labeling with Task-Aware Neural Language Model.AAAI, 2017.
- 24Diogo M. Camacho, Katherine M. Collins, Katherine M. Collins, Rani Powers, James C. Costello, James J. Collins, James J. Collins, James J. Collins. Next-Generation Machine Learning for Biological Networks.Cell, pp. 1581-1592, 2018.
个人信息
Volume abs/1801.09851, Issue 10, 2018, Pages 1745-1752.
被引用次数:4|引用|0
标签
作者
评论