APPLES: Fast Distance Based Phylogenetic Placement

Metin Balaban
Metin Balaban
Shahab Sarmashghi
Shahab Sarmashghi

research in computational molecular biology, pp. 475566-54, 2019.

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Abstract:

Phylogenetic placement consists of adding a query species onto an existing phylogeny and has increasing relevance as sequence datasets continue to grow in size and diversity. Placement is useful for updating existing phylogenies and for identifying samples taxonomically using (meta-)barcoding or metagenomics. Maximum likelihood (ML) metho...More

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