On the impact of contaminants on the accuracy of genome skimming and the effectiveness of exclusion read filters

Eleonora Rachtman
Eleonora Rachtman
Metin Balaban
Metin Balaban

MOLECULAR ECOLOGY RESOURCES, pp. 1-41, 2020.

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Abstract:

The ability to detect the identity of a sample obtained from its environment is a cornerstone of molecular ecological research. Thanks to the falling price of shotgun sequencing, genome skimming, the acquisition of short reads spread across the genome at low coverage, is emerging as an alternative to traditional barcoding. By obtaining fa...More

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