MIMIC-Extract - a data extraction, preprocessing, and representation pipeline for MIMIC-III

Shirly Wang
Shirly Wang
Matthew B. A. McDermott
Matthew B. A. McDermott
Geeticka Chauhan
Geeticka Chauhan
Michael C. Hughes
Michael C. Hughes
Tristan Naumann
Tristan Naumann

ACM CHIL '20: ACM Conference on Health, Inference, and Learning Toronto Ontario Canada April, 2020, pp. 222-235, 2020.

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Abstract:

Machine learning for healthcare researchers face challenges to progress and reproducibility due to a lack of standardized processing frameworks for public datasets. We present $\texttt{MIMIC-Extract}$, an open source pipeline for transforming the raw electronic health record (EHR) data of critical care patients from the publicly-available...More

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