Mobpsweb: A Web-Based Framework To Simulate And Compare Breeding Programs

T. Pook,L. Büttgen, A. Ganesan,N.T. Ha, H. Simianer

G3-GENES GENOMES GENETICS(2021)

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摘要
In this study, we introduce a new web-based simulation framework ("MoBPSweb") that combines a unified language to describe breeding programs with the simulation software MoBPS, standing for "Modular Breeding Program Simulator." Thereby, MoBPSweb provides a flexible environment to log, simulate, evaluate, and compare breeding programs. Inputs can be provided via modules ranging from a Vis.js-based environment for "drawing" the breeding program to a variety of modules to provide phenotype information, economic parameters, and other relevant information. Similarly, results of the simulation study can be extracted and compared to other scenarios via output modules (e.g., observed phenotypes, the accuracy of breeding value estimation, inbreeding rates), while all simulations and downstream analysis are executed in the highly efficient R-package MoBPS.
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关键词
MoBPS, breeding, program, resource, management, simulation, population, genetics, nginx
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