NanoRTax, a real-time pipeline for taxonomic and diversity analysis of nanopore 16S rRNA amplicon sequencing data.

Héctor Rodríguez-Pérez,Laura Ciuffreda,Carlos Flores

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL（2022）

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摘要

This constitutes a proof-of-concept simulation study of how real-time bioinformatic workflows could be used to shorten the turnaround times in critical care settings and provides an instrument for future research on early-response strategies for sepsis.

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关键词

AUC, Area Under the Curve,ICU, Intensive Care Unit,Microbiome,NGS, Next-generation sequencing,Nanopore,ONT, Oxford Nanopore Technologies,Pipeline,ROC, Receiver Operating Characteristic curve,Real-time,Sequencing

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