FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model

Guohui Xiao,Emily Pfaff,Eric Prud'hommeaux,David Booth,Deepak K Sharma,Nan Huo,Yue Yu,Nansu Zong,Kathryn J Ruddy,Christopher G Chute,Guoqian Jiang

Journal of Biomedical Informatics（2022）

引用 5|浏览20

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摘要

The FHIR-Ontop-OMOP system can expose OMOP database as a FHIR-compliant RDF graph. It provides a meaningful use case demonstrating the potentials that can be enabled by the interoperability between FHIR and OMOP CDM. Generated clinical KGs in FHIR RDF provide a semantic foundation to enable explainable AI applications in healthcare.

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关键词

Fast Healthcare Interoperability Resources (FHIR),Data Standards,Semantic Web,Clinical Knowledge Graphs,Virtual Knowledge Graphs,Shape Expressions (ShEx)

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