Correction: Maximizing efficiency in sunflower breeding through historical data optimization

Javier Fernández-González, Bertrand Haquin, Eliette Combes, Karine Bernard, Alix Allard,Julio Isidro y Sánchez

Plant Methods(2024)

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摘要
Genomic selection (GS) has become an increasingly popular tool in plant breeding programs, propelled by declining genotyping costs, an increase in computational power, and rediscovery of the best linear unbiased prediction methodology over the past two decades. This development has led to an accumulation of extensive historical datasets with genotypic and phenotypic information, triggering the question of how to best utilize these datasets. Here, we investigate whether all available data or a subset should be used to calibrate GS models for across-year predictions in a 7-year dataset of a commercial hybrid sunflower breeding program. We employed a multi-objective optimization approach to determine the ideal years to include in the training set (TRS). Next, for a given combination of TRS years, we further optimized the TRS size and its genetic composition. We developed the Min_GRM size optimization method which consistently found the optimal TRS size, reducing dimensionality by 20
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关键词
Genomic selection,Training set optimization,Sunflower hybrids,Historical data,Multi-objective optimization
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