The precise simulation of the human brain requires coupling different models in order to cover the different physiological and functional aspects of this extremely complex organ. Each of this brain models is implemented following specific mathematical and programming approaches, potentially leading to diverging computational behaviour and requirements. Such situation is the typical use case that can benefit from the Modular Supercomputing Architecture (MSA), which organizes heterogeneous computing resources at system level. This architecture and its corresponding software environment enable to run each part of an application or a workflow on the best suited hardware.This paper presents the MSA concept covering current hardware and software implementations, and describes how the neuroscientific workflow resulting of coupling the codes NEST and Arbor is being prepared to exploit the MSA.
Recent research on face analysis has demonstrated the richness of information embedded in feature vectors extracted from a deep convolutional neural network. Even though deep learning achieved a very high performance on several challenging visual tasks, such as determining the identity, age, gender and race, it still lacks a well grounded theory which allows to properly understand the processes taking place inside the network layers. Therefore, most of the underlying processes are unknown and not easy to control. On the other hand, the human visual system follows a well understood process in analyzing a scene or an object, such as a face. The direction of the eye gaze is repeatedly directed, through purposively planned saccadic movements, towards salient regions to capture several details. In this paper we propose to capitalize on the knowledge of the saccadic human visual processes to design a system to predict facial attributes embedding a biologically-inspired network architecture, the HMAX. The architecture is tailored to predict attributes with different textural information and conveying different semantic meaning, such as attributes related and unrelated to the subject’s identity. Salient points on the face are extracted from the outputs of the S2 layer of the HMAX architecture and fed to a local texture characterization module based on LBP (Local Binary Pattern). The resulting feature vector is used to perform a binary classification on a set of pre-defined visual attributes. The devised system allows to distill a very informative, yet robust, representation of the imaged faces, allowing to obtain high performance but with a much simpler architecture as compared to a deep convolutional neural network. Several experiments performed on publicly available, challenging, large datasets demonstrate the validity of the proposed approach.
The human lateral geniculate body (LGB) with its six sickle shaped layers (lam) represents the principal thalamic relay nucleus for the visual system. Cytoarchitectonic analysis serves as the groundtruth for multimodal approaches and studies exploring its function. This technique, however, requires experienced knowledge about human neuroanatomy and is costly in terms of time. Here we mapped the six layers of the LGB manually in serial, histological sections of the BigBrain, a high-resolution model of the human brain, whereby their extent was manually labeled in every 30th section in both hemispheres. These maps were then used to train a deep learning algorithm in order to predict the borders on sections in-between these sections. These delineations needed to be performed in 1 µm scans of the tissue sections, for which no exact cross-section alignment is available. Due to the size and number of analyzed sections, this requires to employ high-performance computing. Based on the serial section delineations, high-resolution 3D reconstruction was performed at 20 µm isotropic resolution of the BigBrain model. The 3D reconstruction shows the shape of the human LGB and its sublayers for the first time at cellular precision. It represents a use case to study other complex structures, to visualize their shape and relationship to neighboring structures. Finally, our results could provide reference data of the LGB for modeling and simulation to investigate the dynamics of signal transduction in the visual system.
The exchange of ideas between computer science and statistical physics has advanced the understanding of machine learning and inference significantly. This interdisciplinary approach is currently regaining momentum due to the revived interest in neural networks and deep learning. Methods borrowed from statistical mechanics complement other approaches to the theory of computational and statistical learning. In this brief review, we outline and illustrate some of the basic concepts. We exemplify the role of the statistical physics approach in terms of a particularly important contribution: the computation of typical learning curves in student teacher scenarios of supervised learning. Two, by now classical examples from the literature illustrate the approach: the learning of a linearly separable rule by a perceptron with continuous and with discrete weights, respectively. We address these prototypical problems in terms of the simplifying limit of stochastic training at high formal temperature and obtain the corresponding learning curves.
The Human Brain Project (HBP) ( https://humanbrainproject.eu/ ) is a large-scale flagship project funded by the European Commission with the goal of establishing a research infrastructure for brain science. This research infrastructure is currently being realised and will be called EBRAINS ( https://ebrains.eu/ ). The wide ranging EBRAINS services for the brain research communities require diverse access, processing and storage capabilities. As a result, it will strongly rely on e-infrastructure services. The HBP led to the creation of Fenix ( https://fenix-ri.eu/ ), a collaboration of five European supercomputing centres, who are providing a set of federated e-infrastructure services to EBRAINS. The Fenix architecture has been designed to uniquely address the need for a wide spectrum of services, from high performance computing (HPC) to on-demand cloud technologies to identity and access federation, for facilitating ease of access and usage of distributed e-infrastructure resources. In this article we describe the underlying concepts for an audience of computational science end-users and developers of domain-specific applications, workflows and platforms services. To exemplify the use of Fenix, we will discuss selected use cases demonstrating how brain researchers can use the offered infrastructure services and describe how access to these resources can be obtained.
