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    SAR and QSAR in environmental research

    SAR and QSAR in environmental research

    JournalISSN 1062-936XeISSN 1029-046X中科院 环境科学与生态学 3区

    年发文量

    研究主题

    论文(1462)

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    1Integrating QSAR, Molecular Dynamics and MM-GBSA to Re-Rank Natural Product–derived DPP4 Candidates from Virtual Screening
    E. Aktaş
    2026
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    2Pretrained Graph Transformer-Driven De Novo Design and Machine Learning Prioritization of Computationally Predicted ENR-InhA (inha) Inhibitors with Potential Relevance to Drug-Resistant Mycobacterium Tuberculosis
    H. Nisar, S. Alwahaishi, A. Khan, H. Al-Ghafli, A. Ur Rahman, A. Agouni
    2026
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    3Integrated Ligand-Based 3D-QSAR, Pharmacophore-Guided Virtual Screening, Target Prediction, DFT, Docking, Molecular Dynamics Simulations, and AI-assisted Retrosynthetic Route Prediction for the Rational Design of Pyrazole–benzimidazole Hybrids Against Colorectal Cancer
    S.M. Patil, V. Rathod, K. Rajgopal, K. Shevate, K. Asgonkar, S. Bhandari, T. Chitre, O. Kamble, P. Bhosale, A. Das, P. Gavali, J. Engel,
    2026
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    4Solvation-weighted Connectivity Indices for GC Retention Prediction of Polycyclic Aromatic Sulphur Heterocycles
    N.E. Moustafa, K.-E.-K.-F. Mahmoud, A.H. Alsulami
    2026
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    5In Silico Drug Repurposing of Beta-Blockers Against HSV-1 TK Using Molecular Docking and Molecular Dynamics Simulations
    Ş. Mollahüseyinoğlu, C. Inan

    Herpes simplex virus type 1 (HSV-1) is highly prevalent, but emerging drug-resistant strains against nucleoside analogs like acyclovir demand novel therapeutics. This study employed an in silico drug repurposing approach to screen 41 beta-blockers as potential non-nucleoside inhibitors targeting HSV-1 thymidine kinase (TK). Molecular docking, 100 ns molecular dynamics (MD) simulations, MM/GBSA binding free energy calculations, per-residue energy decomposition, and ADMET analysis were performed. Docking results revealed several beta-blockers surpassed acyclovir (-5.20 kcal/mol) in binding energy, with bopindolol emerging as the top candidate (-9.32 kcal/mol). Interaction analysis showed bopindolol forms stable hydrogen bonds with Gln125, Arg163, and Arg222, alongside stabilizing hydrophobic interactions. MD simulations confirmed the structural stability of the bopindolol-HSV-1 TK complex, evidenced by stable RMSD, low residue fluctuations, persistent hydrogen bonding, and consistent protein compactness. MM/GBSA calculations yielded a favourable delta G binding of -53.08 ± 3.57 kcal/mol. Energy decomposition indicated binding is driven by van der Waals and electrostatic interactions, with key contributions from Arg222, Tyr172, Met128, and Gln125. Furthermore, ADMET analysis demonstrated favourable pharmacokinetic properties for bopindolol. Overall, bopindolol represents a promising non-nucleoside inhibitor scaffold targeting HSV-1 TK, warranting further experimental validation.

    2026
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    高被引作者

    作者引用发文
    Mark Cronin188838
    Ovanes Mekenyan145434
    J Devillers130251
    Andrew Worth126317
    T W Schultz105028
    Grace Patlewicz104713
    Emilio Benfenati86229
    Vladimir Poroikov81428
    Subhash Basak80525
    Dmitry Filimonov69920

    高产作者

    作者引用发文
    J Devillers130251
    Mark Cronin188838
    Ovanes Mekenyan145434
    Emilio Benfenati86229
    T W Schultz105028
    Vladimir Poroikov81428
    Kunal Roy58525
    Subhash Basak80525
    Tarun Jha32623
    Dmitry Filimonov69920

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