This study aims to evaluate the protective effects of betaine (BTN), an antioxidant agent, against ovarian and uterine toxicity caused by favipiravir (FVP), an antiviral agent, through multifaceted damage pathways. A total of 28 Wistar rats were divided into four experimental groups: Control, BTN (250 mg/kg), FVP (200 mg/kg), and FVP + BTN. At the end of the 10-day protocol, blood samples were collected along with ovarian and uterine tissue samples. Subsequently, the samples were subjected to biochemical analysis, qRT-PCR analysis, histological evaluation, and immunohistochemical studies. These methods assessed oxidative stress, inflammatory, apoptotic, and autophagic responses, hormonal changes, and overall tissue damage. FVP administration significantly increased oxidative stress (MDA, p < 0.001), inflammation (NF-κB, TNF-α, IL-1β, p < 0.001), apoptosis (Caspase-3, Bax, p < 0.001), and autophagy (Beclin-1, LC3A, p < 0.001); while decreasing antioxidant levels, Bcl-2, and steroidogenesis genes (CYP11A1, CYP17A1, CYP19A1, p < 0.001), and reducing serum AMH, E2, FSH, and LH values (p < 0.001). When BTN was administered concomitantly, most of these changes were reversed, antioxidant and hormonal balance were significantly restored, and the increases in oxidative, inflammatory, and apoptotic markers were reduced (p < 0.05–0.001). Histologically, betaine preserved tissue integrity by mitigating ovarian and uterine damage caused by FVP (p < 0.05). FVP caused multifaceted oxidative, inflammatory, apoptotic, and hormonal damage in ovarian and uterine tissues, while BTN significantly reduced these effects, preserving tissue integrity and function.
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