Supersonic MiB

Bilal Wajid,Ali Riza Ekti,Amina Noor,Erchin Serpedin,Muhammad Naseem Ayyaz, Hazem Nounou,Mohamed Nounou

IEEE International Workshop on Genomic Signal Processing and Statistics（2013）

Texas A&M Univ

被引用5|浏览22

摘要

A novel assembly pipeline, MiB, employs Minimum Description Length (MDL), de-Bruijn graphs and Bayesian estimation for reference assisted assembly of the novel genome. In a previous study MiB assembly was compared with nine other assembly algorithms showing significant improvement in results coupled with very large execution times. This correspondence introduces ‘Supersonic MiB’, an extension to our previous study MiB. Supersonic MiB aims to stimulate the assembly pipeline of MiB showing significant improvement in execution time compared to its predecessor.

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关键词

Bayes methods,application program interfaces,biology computing,genomics,graph theory,message passing,Bayesian estimation,MDL,MiB assembly algorithm,assembly pipeline,de-Bruijn graphs,genome,message passing interface,minimum description length,reference assisted assembly,supersonic MiB

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