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1Supplementary Methods and Legends from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh,Sarah Bell,Elizabeth Day,Agata Kochman,

Supplementary Methods and legends for Supplementary tables and figures

2023

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2Figure S4 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh, Sarah Bell,Elizabeth Day,Agata Kochman,

Kaplan Meier overall survival curves by PIK3CA, CDKN2A and TP53 allelic mutation state

2023

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3Figure S3 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh, Sarah Bell,Elizabeth Day,Agata Kochman,

Phasing data for two tumors with bi-allelic TP53 mutations

2023

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4Figure S5 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh, Sarah Bell,Elizabeth Day,Agata Kochman,

Zygosity estimates for the MCT samples by group

2023

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5Table S7 from Genomic and Phenotypic Characterization of a Broad Panel of Patient-Derived Xenografts Reflects the Diversity of Glioblastoma

Rachael A. Vaubel,Shulan Tian,Dioval Remonde,Mark A. Schroeder,Ann C. Mladek,Gaspar J. Kitange,Alissa Caron,Thomas M. Kollmeyer,Rebecca Grove, Sen Peng,Brett L. Carlson, Daniel J. Ma,

PDX Response to Standard Therapy

2023

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6Table S1 from Genomic and Phenotypic Characterization of a Broad Panel of Patient-Derived Xenografts Reflects the Diversity of Glioblastoma

Rachael A. Vaubel,Shulan Tian,Dioval Remonde,Mark A. Schroeder,Ann C. Mladek,Gaspar J. Kitange,Alissa Caron,Thomas M. Kollmeyer,Rebecca Grove, Sen Peng,Brett L. Carlson, Daniel J. Ma,

Histologic diagnoses for all tumors implanted (WHO grade II-IV)

2023

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7Supplementary Materials from Genomic and Phenotypic Characterization of a Broad Panel of Patient-Derived Xenografts Reflects the Diversity of Glioblastoma

Rachael A. Vaubel,Shulan Tian,Dioval Remonde,Mark A. Schroeder,Ann C. Mladek,Gaspar J. Kitange,Alissa Caron,Thomas M. Kollmeyer,Rebecca Grove, Sen Peng,Brett L. Carlson, Daniel J. Ma,

Figures S1-S8, Supplementary Methods, Supplementary Bibliography

2023

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8Table S1 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh, Sarah Bell,Elizabeth Day,Agata Kochman,

A list of the 151 genes included in the Agilent Comprehensive Cancer Panel

2023

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9Table S3 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh,Sarah Bell,Elizabeth Day,Agata Kochman,

Quality Control parameters on all sequenced samples

2023

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10Table S8 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh,Sarah Bell,Elizabeth Day,Agata Kochman,

Raw copy number alterations for all genes in all samples

2023

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11Table S5 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh,Sarah Bell,Elizabeth Day,Agata Kochman,

Quantitative PCR results for high risk HPV genotypes

2023

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12Table S6 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh, Sarah Bell,Elizabeth Day,Agata Kochman,

Copy Number Alterations identified in SCC and MCT samples

2023

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13Table S2 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh,Sarah Bell,Elizabeth Day,Agata Kochman,

A list of genes analysed for copy number state

2023

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14Table S6 from Genomic and Phenotypic Characterization of a Broad Panel of Patient-Derived Xenografts Reflects the Diversity of Glioblastoma

Rachael A. Vaubel,Shulan Tian,Dioval Remonde,Mark A. Schroeder,Ann C. Mladek,Gaspar J. Kitange,Alissa Caron,Thomas M. Kollmeyer,Rebecca Grove, Sen Peng,Brett L. Carlson,Daniel J. Ma,

Molecular subtype, MGMT methylation, expressed fusions

2023

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15Table S2 from Genomic and Phenotypic Characterization of a Broad Panel of Patient-Derived Xenografts Reflects the Diversity of Glioblastoma

Rachael A. Vaubel,Shulan Tian,Dioval Remonde,Mark A. Schroeder,Ann C. Mladek,Gaspar J. Kitange,Alissa Caron,Thomas M. Kollmeyer,Rebecca Grove, Sen Peng,Brett L. Carlson, Daniel J. Ma,

Patient characteristics of viable PDX lines

2023

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16Table S4 from Genomic and Phenotypic Characterization of a Broad Panel of Patient-Derived Xenografts Reflects the Diversity of Glioblastoma

Rachael A. Vaubel,Shulan Tian,Dioval Remonde,Mark A. Schroeder,Ann C. Mladek,Gaspar J. Kitange,Alissa Caron,Thomas M. Kollmeyer,Rebecca Grove, Sen Peng,Brett L. Carlson, Daniel J. Ma,

Frequency of genomic alterations in PDX compared to TCGA

2023

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17Table S4 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh, Sarah Bell,Elizabeth Day,Agata Kochman,

A full list of mutations identified in SCC and MCT samples

2023

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18Figure S1 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh, Sarah Bell,Elizabeth Day,Agata Kochman,

Copy number profiles of MCT samples.

2023

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19Table S3 from Genomic and Phenotypic Characterization of a Broad Panel of Patient-Derived Xenografts Reflects the Diversity of Glioblastoma

Rachael A. Vaubel,Shulan Tian,Dioval Remonde,Mark A. Schroeder,Ann C. Mladek,Gaspar J. Kitange,Alissa Caron,Thomas M. Kollmeyer,Rebecca Grove, Sen Peng,Brett L. Carlson, Daniel J. Ma,

Short tandem repeat genotype and PDX growth characteristics

2023

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20Table S7 from the Driver Mutational Landscape of Ovarian Squamous Cell Carcinomas Arising in Mature Cystic Teratoma

Susanna L. Cooke,Darren Ennis,Lisa Evers,Suzanne Dowson,Mei Yen Chan,James Paul,Lynn Hirschowitz,Rosalind M. Glasspool,Naveena Singh,Sarah Bell,Elizabeth Day,Agata Kochman,

Concordance of alterations in cases with multiple SCC samples

2023

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作者统计

合作学者

合作机构

D-Core

合作者
学生
导师

Elizabeth Lenkiewicz合作论文数24

Andrew Biankin合作论文数Wolfson Wohl Cancer Research Centre, University of Glasgow;Glasgow Precision Oncology Laboratory, University of Glasgow;Gabriel Precision Oncology;ICGC ARGO;Cancer Research UK;Precision-Panc20

Michael T. Barrett合作论文数19

Susanna L Cooke合作论文数15

Philip A. Beer合作论文数Department of Haematology, Addenbrooke's Hospital15

Sancha Martin合作论文数15

Agata Kochman合作论文数14

Mei Yen Chan合作论文数14

Rosalind Margaret Glasspool合作论文数The Beatson Institute for Cancer Research, University of Glasgow14

Darren Ennis合作论文数14

Dowson Suzanne合作论文数14

Wilkinson Nafisa合作论文数14

Day Elizabeth合作论文数MRC Laboratory of Molecular Biology, Cambridge, UK.14

James Paul合作论文数Western Infirmary, Beatson Oncology Centre14

Naveena Singh合作论文数14

Lynn Hirschowitz合作论文数14

Iain McNeish合作论文数Division of Cancer, Department of Surgery and Cancer, Faculty of Medicine, Imperial College London;Ovarian Cancer Action Research Centre, The Vivienne Wohl Unit, Imperial College London;Institute of Reproductive and Developmental Biology, Imperial College London14

Tara Holley合作论文数13

Mark A Schroeder合作论文数Department of Radiation Oncology, Mayo Foundation for Medical Education and Research11

Dioval Remonde合作论文数East Carolina Univ10

Jann N. Sarkaria合作论文数Department of Radiation Oncology, Mayo Clinic;Mayo Clinic Comprehensive Cancer Center10

Robert B. Jenkins合作论文数Division of Laboratory Genetics and Genomics, Department of Laboratory Medicine and Pathology, Mayo Clinic;Mayo Clinic Comprehensive Cancer Center10

Paul A. Decker合作论文数Division of Clinical Trials and Biostatistics, Mayo Clinic10

Erik P. Sulman合作论文数Division of Oncology, Children's Hospital of Philadelphia10

Nhan Tran合作论文数Translational Genomics Research Institute10

Harshil Dhruv合作论文数10

Daniel D. Von Hoff合作论文数Translational Genomics Research Institute;HonorHealth Clinical Research Institute;Mayo Clinic10

Jeanette E. Eckel Passow合作论文数Division of Computational Biology, Department of Quantitative Health Sciences, Mayo Clinic10

Brett L. Carlson合作论文数10

Kitange Gaspar J合作论文数Department of Radiation Oncology, Mayo Clinic9

Roel Verhaak合作论文数Department of Neurosurgery, Yale University School of Medicine9

Vaubel Rachael A合作论文数9

Michael Berens合作论文数Translational Genomics Research Institute9

Caterina Giannini合作论文数Comprehensive Cancer Center, Mayo Clinic;Department of Laboratory Medicine & Pathology, Mayo Clinic;Dipartimento di Scienze Biomediche e Neuromotorie, University of Bologna9

Thomas M. Kollmeyer合作论文数Division of Experimental Pathology, Mayo Clinic9

Eric W. Klee合作论文数Mayo Clinic;2 In - vitrogen Corporation;Mayo Clinic, Mayo Clinic9

Ann C. Mladek合作论文数9

Daniel Honore Lachance合作论文数Section of Neuro-Oncology, Department of Neurology, Mayo Clinic;Division of Clinical Biochemistry & Immunology, Department of Laboratory Medicine and Pathology, Mayo Clinic9

Shulan Tian合作论文数China National Rice Research Institute, China Natl. Rice Research Institute9

Ian F. Parney合作论文数Cancer Center, Mayo Clinic;Department of Neurosurgery, Mayo Clinic9

Andrea Califano合作论文数Institute for Cancer Genetics, Columbia University;Vagelos College of Physicians & Surgeons, Columbia University Irving Medical Center;DarwinHealth, Inc.9

Rebecca Grove合作论文数8

Qianghu Wang (汪强虎)合作论文数Department of Bioinformatics, School of Biomedical Engineering and Informatics, Nanjing Medical University8

Bianca Maria Marin合作论文数8

Huihuang Yan合作论文数8

Caron Alissa A合作论文数8

Gobinda Sarkar合作论文数8

Terry C. Burns合作论文数Stem Cell Institute, University of Minnesota Medical School8

Fredric B. Meyer合作论文数Departments of Neurosurgery, Mayo Clinic;Center for Regenerative Biotherapeutics, Mayo Clinic;Mayo Clinic Comprehensive Cancer Center8

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