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职业迁徙
个人简介
My Research
KEYWORDS
computational biology, genomics, Hi-C data analysis, pediatric acute lymphoblastic leukemia, cancer, bioinformatics, molecular pathology
SUMMARY
Our lab has extensive experience in Cancer Genomics and Epigenomics involving designing computational methods and pipelines, analyzing data and interpreting the results in different biological contexts (e.g. leukemia, stem cells). We have developed GenomicTools, a free open-source computational platform for designing high-throughput analytics in genomics (Tsirigos et al. Bioinformatics 2011), and HiC-bench, a computational platform for comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking. Our work was pivotal in the molecular understanding of epigenetic changes in pediatric acute lymphoblastic leukemia (Ntziachristos*, Tsirigos* et al. Nature Medicine 2012; Ntziachristos*, Tsirigos* et al. Nature 2014) as well as the discovery of novel long non-coding RNAs as biomarkers and potential therapeutic targets (Trimarchi et al. Cell 2014).
KEYWORDS
computational biology, genomics, Hi-C data analysis, pediatric acute lymphoblastic leukemia, cancer, bioinformatics, molecular pathology
SUMMARY
Our lab has extensive experience in Cancer Genomics and Epigenomics involving designing computational methods and pipelines, analyzing data and interpreting the results in different biological contexts (e.g. leukemia, stem cells). We have developed GenomicTools, a free open-source computational platform for designing high-throughput analytics in genomics (Tsirigos et al. Bioinformatics 2011), and HiC-bench, a computational platform for comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking. Our work was pivotal in the molecular understanding of epigenetic changes in pediatric acute lymphoblastic leukemia (Ntziachristos*, Tsirigos* et al. Nature Medicine 2012; Ntziachristos*, Tsirigos* et al. Nature 2014) as well as the discovery of novel long non-coding RNAs as biomarkers and potential therapeutic targets (Trimarchi et al. Cell 2014).
研究兴趣
论文共 313 篇作者统计合作学者相似作者
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Ray Pillai,Sarah E. LeBoeuf,Yuan Hao, Connie New, Jenna L. E. Blum,Ali Rashidfarrokhi,Shih Ming Huang,Christian Bahamon, Warren L. Wu, Burcu Karadal-Ferrena,Alberto Herrera,Ellie Ivanova,
SCIENCE ADVANCESno. 13 (2024): eadm9859-eadm9859
Gloria P. Contreras Yametti,Gabriel Robbins,Ashfiyah Chowdhury,Sonali Narang, Talia H. Ostrow, Harrison Kilberg,Joshua Greenberg, Lindsay Kramer,Elizabeth Raetz,Aristotelis Tsirigos,Nikki A. Evensen,William L. Carroll
LEUKEMIA & LYMPHOMAno. 1 (2024): 78-90
Bojing Liu, Meaghan Polack,Nicolas Coudray,Adalberto Claudio Quiros, Theodore Sakellaropoulos, Augustinus S.L.P. Crobach,J. Han J.M. van Krieken,Ke Yuan,Rob A.E.M. Tollenaar,Wilma E. Mesker,Aristotelis Tsirigos
biorxiv(2024)
Havva Ortabozkoyun,Pin-Yao Huang, Edgar Gonzalez-Buendia, Hyein Cho, Sang Kim,Aristotelis Tsirigos,Esteban Mazzoni,Danny Reinberg
biorxiv(2024)
Ioanna Tiniakou, Pei-Feng Hsu,Lorena S. Lopez-Zepeda,Goerkem Garipler,Eduardo Esteva, Nicholas M. Adams,Geunhyo Jang,Chetna Soni,Colleen M. Lau, Fan Liu,Alireza Khodadadi-Jamayran, Tori C. Rodrick,
SCIENCE IMMUNOLOGYno. 94 (2024): eadi1023-eadi1023
crossref(2024)
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Immunity (2024)
Despoina Kalfakakou,Emily A. Kawaler, Dylan Tamayo,Lidong Wang, Rosmel Hernandez,Amanda Ackermann,Xiaohong Jing,Cristina Hajdu,Cynthia Loomis, Adrianna Heguy,Amanda W. Lund,Theodore H. Welling,
CANCER RESEARCHno. 2 (2024)
Joanna Pierro,Jason Saliba,Sonali Narang,Gunjan Sethia,Shella Saint Fleur-Lominy,Ashfiyah Chowdhury,Anita Qualls, Hannah Fay, Harrison L. Kilberg,Takaya Moriyama, Tori J. Fuller,David T. Teachey,
crossref(2023)
Eileen M. Boyle,Patrick Blaney, James H. Stoeckle,Yubao Wang,Hussein Ghamlouch, Dylan Gagler,Marc Braunstein,Louis Williams, Avital Tenenbaum,Ariel Siegel,Xiaoyi Chen,Gaurav Varma,
crossref(2023)
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