EDIT: Easy-to-use Bio-Data Extraction, Integration and Refreshing Tools
Computer and Computational Sciences, 2006. IMSCCS '06. First International Multi-Symposiums（2006）
摘要
Systems biology research demands the ability to construct custom-designed bio-entities from heterogeneous data sources. EDIT is an ongoing project aimed at building a system to allow bio-researchers with minimum computer proficiency to define the structure of a desired bio-entity, and identify the data sources for its data fields. Then, the system automatically extracts and output the data in the predefined structure and format. The system consists of a host site, which maintains and updates the configuration files specified for source databases, and user sites, which perform data extraction and integration by using the configuration files. An event-trigger-rule server is used to support data refreshing and to notify biologists about changes made to source databases
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关键词
source databases,database management systems,refreshing tools,data source,data field,predefined structure,data structures,bio-data refreshing tool,host site,data structure,bio-data integration,data extraction,heterogeneous data source,custom-designed bio-entities,biology computing,easy-to-use bio-data extraction,configuration file,event-trigger-rule server,data mining,biology,database systems,distributed databases,system biology,cancer,databases,distributed computing,genetics,proteins,bioinformatics,data engineering
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