PERMORY-MPI

Volker Steiß,Thomas Letschert,Helmut Schäfer,Roman Pahl

Bioinformatics（2012）

引用 9|浏览30

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摘要

Summary: PERMORY is software for accelerated permutation testing of genome-wide association studies (GWAS). We have parallelized PERMORY using the Message-Passing Interface resulting in a nearly linear speedup. Furthermore, we added accelerated analysis of GWAS using quantitative phenotypes, and an accurate estimation of the effective number of independent tests. Availability and implementation: Free download from http://permory.org Contact:rpahl@staff.uni-marburg.de; volker.steiss@mni.thm.de

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关键词

effective number,linear speedup,accelerated analysis,genome-wide association study,accelerated permutation testing,independent test,free download,Message-Passing Interface,quantitative phenotypes,accurate estimation

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