Whole genome detection of rotavirus mixed infections in human, porcine and bovine samples co-infected with various rotavirus strains collected from sub-Saharan Africa

Martin M. Nyaga,Khuzwayo C. Jere,Mathew D. Esona,Mapaseka L. Seheri,Karla M. Stucker,Rebecca A. Halpin,Asmik Akopov,Timothy B. Stockwell,Ina Peenze,Amadou Diop,Kader Ndiaye,Angeline Boula,Gugu Maphalala,Chipo Berejena,Jason M. Mwenda,A. Duncan Steele, David E. Wentworth,M. Jeffrey Mphahlele

Infection, Genetics and Evolution（2015）

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摘要

•Full length amplicons for mixed infections from six African countries were sequenced.•Genomes had at least one segment in each sample for which duplicate sequences existed.•The first co-infections on porcine and bovine samples are reported.•The first report on African G9 human strain in lineage VI.

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关键词

Rotavirus,Mixed infections,Reassortants,Whole genome,Africa

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