An assessment of Oxford Nanopore sequencing for human gut metagenome profiling: A pilot study of head and neck cancer patients

Thidathip Wongsurawat,Mayumi Nakagawa,Omar Atiq,Hannah N. Coleman,Piroon Jenjaroenpun, James I. Allred,Angela Trammel,Pantakan Puengrang,David W. Ussery,Intawat Nookaew

Journal of Microbiological Methods（2019）

引用 11|浏览23

暂无评分

摘要

Gut metagenome profiling using the Oxford Nanopore Technologies (ONT) sequencer was assessed in a pilot-sized study of 10 subjects. The taxonomic abundance of gut microbiota derived from ONT was comparable with Illumina Technology (IT) for the high-abundance species. IT better detected low-abundance species through amplification, when material was limited.

查看译文

关键词

Microbiome,Shotgun metagenome sequencing,Head and neck cancer,Next-generation sequencing,Third-generation sequencing

AI 理解论文

溯源树

样例

生成溯源树，研究论文发展脉络

Chat Paper

正在生成论文摘要