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Yersinia Canariae Sp. Nov., Isolated from a Human Yersiniosis Case

International journal of systematic and evolutionary microbiology(2020)

Cited 8|Views21
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Abstract
A Gram-negative rod from the Yersinia genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technologies (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within Yersinia , despite biochemical similarities to Yersinia enterocolitica . The 16S ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chromosome is CP043727. The type strain is SRR7544370T (=NCTC 14382T/=LMG 31573T).
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Key words
Yersinia canariae,MinION,whole genome sequencing,taxonomy,yersiniosis,Oxford Nanopore Technologies
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