Efficient Memory Management in Likelihood-based Phylogenetic Placement
2021 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)(2021)
摘要
Maximum likelihood based phylogenetic methods score phylogenetic tree topologies comprising a set of molecular sequences of the species under study, using statistical models of evolution. The scoring procedure relies on storing intermediate results at inner nodes of the tree during the tree traversal. This induces comparatively high memory requirements compared to less compute-intensive methods su...
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关键词
Distributed processing,Runtime,Conferences,Computational modeling,Memory management,Vegetation,Tools
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