Genetic diversity analysis and core collection construction for Amaranthus tricolor germplasm based on genome-wide single-nucleotide polymorphisms

Ken Hoshikawa,Ya-Ping Lin,Roland Schafleitner,Kenta Shirasawa,Sachiko Isobe,Duc Chinh Nguyen,Ryo Ohsawa,Yosuke Yoshioka

Scientia Horticulturae（2023）

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摘要

•Genetic diversity among Amaranthus tricolor accessions was evaluated using genome-wide SNPs.•A set of 5638 SNPs without missing data in accessions was identified.•The population structure was analyzed among accessions.•A core collection of 105 accessions was created.

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关键词

Amaranthus tricolor,ddRAD,Genetic resource,SNP,Genetic diversity,Population structure

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