Supplementary Figures 1 - 2 from Proteogenomic Analysis Reveals Unanticipated Adaptations of Colorectal Tumor Cells to Deficiencies in DNA Mismatch Repair

PDF file - 909K, Figure 1A. Spectra obtained from the customized dataset (Observed) and from a synthetic GPATCH4 peptide (Synthetic ) Figure 1B. Spectra obtained from the customized dataset (Observed) and from a synthetic CCT8 peptide (Synthetic ) Figure 1C. Spectra obtained from the customized dataset (Observed) and from a synthetic ANXA11 peptide (Synthetic ) Figure 1D. Spectra obtained from the customized dataset (Observed) and from a synthetic SRSF9 peptide (Synthetic ) Figure 1E. Spectra obtained from the customized dataset (Observed) and from a synthetic CEACAM1 peptide (Synthetic ) Figure 1F. Spectra obtained from the customized dataset (Observed) and from a synthetic EBP41L1 peptide (Synthetic ) Figure S2. Comparison of spectral count results with MRM results for selected proteins. Panel A, HSP90AB1; Panel B, HSP90AA1; Panel C, BAG3; Panel D, TNOP1; Panel E, FECH; Panel F, TTC19; Panel G, CAND1; Panel H, CARM1; Panel I, NARS ; Panel J, PAICS; Panel K, PFAS; Panel L, EEF2; Panel M, CPD; Panel N, DSTN; Panel O, ESRP1; Panel P, ERAP1, Panel Q, KRT8; Panel R, KRT18; Panel S, KRT19; and Panel T, CDH1.