Comparative Analysis of Gene Expression between Early Maturation Mutant 'Beni Shogun' and 'Fuji' Cultivars during Fruit Development and Ripening

We aimed to compare the maturation and ripening characteristics of two apple cultivars, early maturation mutant 'Beni Shogun' and 'Fuji'. The study revealed that both cultivars reached full bloom on the same day, but 'Beni Shogun' matured earlier than 'Fuji'. In addition, differences were observed in fruit size, length, width, sweetness, acidity, and ethylene production levels. The study also examined the expression patterns of genes involved in ethylene biosynthesis and signal transduction, as well as those involved in auxin signal transduction and transcriptional regulation, to investigate the putative molecular mechanism behind the distinct fruit development, maturation, and ripening. The expression of the MdACO1 gene showed a sharp increase after the maturation date, whereas the expression of the MdACO7 gene was higher in the early and middle stages of fruit development. The clustering analysis provided insights into the correlation between the phenotypic traits and expression levels of the key genes. They were categorized into three clusters, and the third cluster consisted of six phenotypes, including fruit size, length, width, sweetness, starch content, and ethylene production, as well as the one gene MdACO1. These findings suggest that 'Beni Shogun' and 'Fuji' have distinct fruit development and ripening behaviors, with 'Beni Shogun' maturing earlier than 'Fuji'.