Bioinformatic Analysis of lncRNA Mediated Competitive Endogenous RNA Network in Intestinal Ischemia/reperfusion Injury

Abstract BackgroundRecently, an increasing number of studies have reported the roles of competitive endogenous RNA (ceRNA) networks in ischemia/reperfusion (I/R) injury, which include the liver, kidney, heart, brain, and intestine. However, the functions and mechanisms of long non-coding RNAs (lncRNAs), which serve as ceRNA networks in intestinal I/R injury, are still unclear. MethodsIn this study, bioinformatics methods were used to filter and construct the lncRNA-miRNA-mRNA networks in intestinal I/R injury. RNA expression data were retrieved from NCBI GEO datasets, the expression profiles between mouse small intestine with superior mesenteric artery occlusion and Sham operation was analyzed, and 189 microRNA differential expressed genes(miDEGs) were discovered successfully from miRNA GEO dataset (GSE83701). Next, targeted lncRNAs and mRNA in the database were matched based on miDEGs. Then, lncRNA-miRNA-mRNA networks were constructed with Cytoscape. The hub lncRNA-miRNA-mRNA networks were selected via Cytoscape plug-in CytoHubba and intersected mRNAs of datasets GSE96733 and GSE83701. Finally, the vital nodes of the ceRNA networks were validated by qPCR. ResultsThe 1700020114Rik/mmu-miR-7a-5p/Klf4 axis was postulated to play a potential role in intestinal I/R injury.ConclusionThe results shed novel insight into the molecular mechanism of ceRNA networks in intestinal I/R injury and highlighted the potential of 170002700020114Rik/mmu-miR-7a-5p/Klf4 ceRNA network in the prevention and treatment of intestinal I/R injury.