Whole-genome sequence and annotation of Penstemon davidsonii

Kate L. Ostevik, Magdy Alabady, Mengrui Zhang,Mark D. Rausher

G3-GENES GENOMES GENETICS(2024)

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摘要
Penstemon is the most speciose flowering plant genus endemic to North America. Penstemon species' diverse morphology and adaptation to various environments have made them a valuable model system for studying evolution. Here, we report the first full reference genome assembly and annotation for Penstemon davidsonii. Using PacBio long-read sequencing and Hi-C scaffolding technology, we constructed a de novo reference genome of 437,568,744 bases, with a contig N50 of 40 Mb and L50 of 5. The annotation includes 18,199 gene models, and both the genome and transcriptome assembly contain over 95% complete eudicot BUSCOs. This genome assembly will serve as a valuable reference for studying the evolutionary history and genetic diversity of the Penstemon genus.
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关键词
Penstemon davidsonii,Davidson's beardtongue,PacBio Hifi,Hi-C,genome assembly,genome annotation
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