Population segregation catalyses genetic differentiation and can lead to speciation. Population genetic structure is also critically important for population management, especially in species characterised by small, isolated populations. Sandhill Crane (Antigone canadensis) populations of the Pacific Flyway are made up of breeding populations nesting west of the Rocky Mountains, and isolated by intermediate mountain ranges. Current management policy in British Columbia treats all Sandhill Cranes as a single population, whereas in the western United States, subpopulations are subject to population-specific management. Here, we analyse microsatellite markers, mitochondrial DNA sequences, and mitochondrial haplogroups derived from 203 individual Sandhill Cranes to elucidate the population genetic structure of cranes migrating along the Pacific Flyway to summer breeding habitat on the North and Central Coast of British Columbia and Southeast Alaska. STRUCTURE, AMOVA, F ST, DAPC, and phylogenetic analyses reveal that geographically separated crane populations along the west coast of North America show substantial genetic differentiation in the Pacific Flyway. These findings are consistent with behavioural and ecological evidence-divergent diets, flyways, and breeding habitats. We conclude that the relatively small coastal Sandhill Crane populations deserve special management consideration to safeguard their genetic diversity and adaptations, and to mitigate deleterious impacts of current and future climate change scenarios.

It is often assumed that the northern peripheral populations of species’ ranges are genetically depauperate due in part to founder effects from postglacial colonization. The majority of federally protected plant species are peripheral in Canada, yet we have little information about their patterns of genetic diversity and structure. In British Columbia, the majority of these protected plant species occur in two threatened habitats: the Garry oak and Okanagan shrub-steppe ecosystems. Using universal noncoding chloroplast DNA markers, we investigated genetic diversity and genetic structure in four rare and common plant species pairs inhabiting these two ecosystems. We found that rare species had lower genetic diversity than their common congeners, and detected contrasting patterns of regional diversity and structure based on ecosystem. Species from the Garry oak ecosystem showed lower genetic diversity in the northern deglaciated region and significant differentiation between regions, likely due to limited dispersal between Vancouver Island and the mainland. Species from the Okanagan shrub-steppe, however, tended to have uniform diversity across their range and lack regional structure. This study provides an important first look at the phylogeographic patterns of four rare plant species in British Columbia.

Subalpine fir, Abies lasiocarpa, occurs throughout western North America, often in forest–tundra parkland. To resolve the presence of varieties in this species, we surveyed microsatellite genetic markers in 11 populations containing three putative varieties of Abies lasiocarpa: (1) var. lasiocarpa, (2) var. bifolia, and (3) var. arizonica. We tested primers from related taxa, and 13 of the best primer pairs were used for assays. Within populations, both heterozygosity and allelic richness were approximately 10% lower in var. lasiocarpa. The STRUCTURE procedure struggled to assign populations to groups correctly; at K = 3, individuals were assigned to their putative varieties with approximately 70% accuracy. Regardless, both lasiocarpa and bifolia were correctly assigned more than expected by chance, indicating that these taxa are distinct. A dendrogram of genetic distances showed var. arizonica to exhibit higher evolutionary distance from the other two varieties and serves as an outgroup. The dendrogram also showed a nesting of var. bifolia clades within var. lasiocarpa, indicating a complex relationship between var. lasiocarpa and var. bifolia. Comparisons among the STRUCTURE population assignments for K = 2, K = 3, and K = 4 identified populations with cryptic admixture and indicate a “ lasiocarpa–bifolia” subspecies complex that warrants further study.

Description The importance of disturbance Work in sea otters over the last few decades has transformed our understanding of the importance of specific species, or keystones, as drivers of community structure and stability. Foster et al. took the next step and tested whether otter foraging might influence genetic diversity in an eelgrass ecosystem (see the Perspective by Roman). The authors found that eelgrass genetic diversity was significantly higher where otters were present and that the impact was related to time: Longer otter presence was associated with higher genetic diversity. These results illustrate how the actions of a predator can affect the diversity of a producer in a tropic system. —SNV Digging by sea otters promotes increases in genetic diversity and ecological resilience in eelgrass meadows. Most knowledge regarding the role of predators is ecological in nature. Here, we report how disturbance generated by sea otters (Enhydra lutris) digging for infaunal prey in eelgrass (Zostera marina) meadows increases genetic diversity by promoting conditions for sexual reproduction of plants. Eelgrass allelic richness and genotypic diversity were, respectively, 30 and 6% higher in areas where recovering sea otter populations had been established for 20 to 30 years than in areas where they had been present <10 years or absent >100 years. The influence of sea otter occupancy on the aforementioned measures of genetic diversity was stronger than those of depth, temperature, latitude, or meadow size. Our findings reveal an underappreciated evolutionary process by which megafauna may promote genetic diversity and ecological resilience.

We used microsatellite genetic markers to evaluate the mating system of western red cedar (Thuja plicata Donn ex D. Don) under various seed orchard pollen management schemes. We primarily examined whether supplemental mass pollination (SMP) can reduce the observed selfing rates. Pollen blowing and “hooding” were also examined in smaller tests. Only SMP was consistently effective in reducing the selfing rate, from 30% to 20%. The correlation of paternity was quite high (60%–90%) in two of three orchards, and in these two orchards the application of SMP reduced this correlation by about 10% as well. The correlation of paternity is the fraction of full-sibling vs. half-sibling progeny, and unbiased estimates can be obtained with few loci, even single loci, in contrast to other types of paternity analysis. We also find the microsatellite amplicon sizes should be pooled into “bins” of 2–4 nucleotides, owing to unintended errors of assay; otherwise the estimates are biased. This new feature of mating system estimation was incorporated into the computer program MLTR.

Summary Community genetics research has posited a genetic basis to the assembly of ecological communities. For arthropod herbivores in particular, there is strong support that genetic variation in host plants is a key factor shaping their diversity and composition. However, the specific plant phenotypes underlying herbivore responses remain poorly explored for most systems. We address this knowledge gap by examining the influence of both genetic and phenotypic variation in a dominant host‐plant species, Salix hookeriana, on its associated arthropod herbivore community in a common garden experiment. Specifically, we surveyed herbivore responses among five different arthropod feeding guilds to 26 distinct S. hookeriana genotypes. Moreover, we quantified the heritability of a suite of plant traits that determine leaf quality (e.g. phenolic compounds, trichomes, specific leaf area, C : N) and whole‐plant architecture, to identify which traits best accounted for herbivore community responses to S. hookeriana genotype. We found that total herbivore abundance and community composition differed considerably among S. hookeriana genotypes, with strong and independent responses of several species and feeding guilds driving these patterns. We also found that leaf phenolic chemistry displayed extensive heritable variation, whereas leaf physiology and plant architecture tended to be less heritable. Of these traits, herbivore responses were primarily associated with leaf phenolics and plant architecture; however, different herbivore species and feeding guilds were associated with different sets of traits. Despite our thorough trait survey, plant genotype remained a significant predictor of herbivore responses in most trait association analyses, suggesting that unmeasured host‐plant characteristics and/or interspecific interactions were also contributing factors. Taken together, our results support that the genetic basis of herbivore community assembly occurs through a suite of plant traits for different herbivore species and feeding guilds. Still, identifying these phenotypic mechanisms requires measuring a broad range of plant traits and likely further consideration of how these traits affect interspecific interactions.

Abstract The family Aplodontiidae contains a single, monotypic extant genus, Aplodontia (mountain beaver), which was first described by Rafinesque in 1817. Phylogenetic studies have shown that it is the sister lineage to squirrels. Aplodontia rufa is endemic to the Pacific Northwest and ranges from central California to British Columbia, Canada. Currently, 7 described subspecies are recognized based on morphological taxonomic studies. In this study, mitochondrial and nuclear genes were sequenced to infer molecular phylogenies of A. rufa. One of the goals of this study was to use molecular data to test the current taxonomic hypothesis based on morphology. Another goal was to incorporate geographic information to elucidate distributions of major clades. Our results support the previously held subspecies designations based on morphological taxonomy, with 1 main exception: we determined that within A. rufa, the subspecies A. rufa rainieri and A. rufa rufa north of the Columbia River represent a single lineage and should revert to the name A. rufa olympica. Although we revised geographic boundaries for some groups (A. r. rufa, A. r. olympica, and A. r. pacifica), only the conservation status and management of A. r. olympica (previously 2 subspecies) in Canada may be affected. Our findings support the continued conservation efforts for the isolated and endangered lineages present in coastal California.

We sequenced four rDNA regions (ITS-1, ITS-2, 5.8S, and D3 region of 28S) from the parasitic nematode Cystidicola spp. from seven species of fish host and 11 locations in Canada and Finland to elucidate suspected unresolved genetic variation within the genus. A holarctic species, Cystidicola farionis from the swim bladder of Salmonidae and Osmeridae, and a nearctic species, Cystidicola stigmatura from trout and char (Salvelinus spp.), differ in life history, host and geographic range, reproductive strategy, and adult and egg morphology. These nematodes were identical at three rDNA regions (ITS-1, 5.8S, and D3); however, two ITS-2 variants were found that differed at four nucleotide positions: variant I (366 bp) was found in British Columbia populations of C. farionis and in C. stigmatura and variant II (369 bp) was found in Ontario and Finnish populations of C. farionis. These results demonstrate that two species with distinct morphology and biology can have identical rDNA sequences, while two morphologically identical isolates have different ITS-2 sequences. Thus, rDNA spacer regions may not be useful for distinguishing biologically valid species or subspecies in some nematode groups. Although phenotypic variation suggested a third undescribed species of Cystidicola from lake whitefish (Coregonus clupeaformis), rDNA analysis did not provide meaningful evidence of its uniqueness.