Continental shelves experience many human pressures with demersal fisheries central to disturbing the ocean floor. However, ecological processes such as predation rates of benthos and their relationship with bottom fishing are often unknown for large marine ecosystems. We examined the amount of benthos consumed by 14 benthivorous fishes, the overlap between benthos predation and bottom fishing (dredge and trawl gear), and temporal trends in benthivorous fish abundance and the number of fishing trips on the northeast US continental shelf. Mean annual predation (biomass of prey removed) and 95% confidence intervals ranged from .0002 (.0001-.0003) to 3967 (1761-7112) t per 10-min area squared grid cell and prey taxa for these benthivorous fishes. Predation and bottom fishing had overlapping footprints of activity, which were slightly stronger for dredge gear. Trophic success (ratio of prey biomass eaten to the biomass of the benthivore community per grid cell) revealed more Bivalvia, Gammaridea, and Polychaeta eaten in areas targeted by trawling with more fish biomass. In contrast, dredging did not target fish biomass, but these areas had increased (Echinoidea, Gammaridea, and other benthos) or decreased (Ophiuroidea) trophic success relative to dredging footprint, suggesting habitat preferences for benthic prey and demersal fisheries have converged rather than diverged. Despite declines in bottom fishing, recent increases in benthivorous fish abundance and growing interest in ocean floor use suggest that fisheries managers should ensure benthivores have sufficient prey resources relative to their community size and human pressures to promote long-term sustainability of demersal fisheries and healthy ecosystems.

Weakfish (Cynoscion regalis) is not federally managed but feeds on species of management and ecological interest. We examined the trophic ecology of weakfish in Chesapeake Bay and the coastal and offshore waters of the eastern United States. For these areas, we determined the dominant prey of weakfish; identified how much diet variation was explained by the factors: season, size class, and year; and quantified prey biomass removed by weakfish from 2007 to 2019. In general, diet composition was mostly dominated by Engraulidae, Osteichthyes (bony fishes), and Mysidacea, and significantly varied by season and size class in Chesapeake Bay and coastal waters, although this was less dramatic in Chesapeake Bay. The total amount of variance explained by the three factors was 23.1% (Chesapeake Bay) and 14.7% (coastal waters), with year not being a significant factor in explaining weakfish diet variation for these areas. Weakfish total prey biomass removal occurred primarily in coastal waters in the fall and small size class (annual mean: approximately 41,038 t; maximum: approximately 63,793 t). Highly opportunistic feeders, weakfish cannibalism also played an essential part of their diet. These results have implications for fisheries and ecosystem management of weakfish when considering ecological interactions in regulatory approaches, such as recruitment and cannibalism, competition with federally managed fishes, and the natural mortality of their prey.

Changing distribution and abundance of small pelagic fishes may drive changes in predator distributions, affecting predator availability to fisheries and surveys. However, small pelagics are difficult to survey directly, so we developed a novel method of assessing the aggregate abundance of 21 small pelagic forage taxa via predator stomach contents. We used stomach contents collected from 22 piscivore species captured by multiple bottom trawl surveys within a vector autoregressive spatio-temporal model to assess trends of small pelagics on the Northeast US shelf. The goal was to develop a spatial “forage index” to inform survey and (or) fishery availability in the western North Atlantic bluefish ( Pomatomus saltatrix) stock assessment. This spatially resolved index compared favorably with more traditional design-based survey biomass indices for forage species well sampled by surveys. However, our stomach content-based index better represented smaller unmanaged forage species that surveys are not designed to capture. The stomach-based forage index helped explain bluefish availability to the recreational fishery for stock assessment and provided insight into pelagic forage trends throughout the regional ecosystem.

Ecosystem management requires an integrated understanding of ecological interactions. In the Gulf of Maine (GoM), trophic information pertaining to commercially important groundfishes and nearshore prey communities is lacking. We characterized nearshore communities and groundfish diets using data collected from nearshore surveys (864 bottom trawls and 3638 stomach samples of six groundfish species) conducted biannually (spring and fall) in Midcoast Maine and Penobscot Bay from 2012 to 2022. Groundfish diets were dominated by some of the most available nearshore prey (gadiform and clupeiform fishes and pandalid and crangonid shrimps). Shifts in relative prey availability over environmental gradients (e.g., depth and position along the coast), across seasons, and over years corresponded with parallel patterns in prey contributions to groundfish diets in specific predator-prey interactions. Negative trends in the relative availability and diet occurrence of signature GoM prey taxa (Northern shrimp Pandalus borealis, Atlantic herring Clupea harengus, and euphausiids) indicate that broader ecosystem changes, such as steady rises in water temperature and shifts in species distributions, are impacting nearshore trophic dynamics in the GoM. These observations provide timely information on mechanisms that underlie groundfish productivity and warrant inclusion of nearshore trophic dynamics in relevant ecosystem models.

Gulf Stream flounder, Citharichthys arctifrons, are regularly observed in fish diets of the northeast U.S. continental shelf, yet lack commercial value and are often ignored. Similarly, Gulf Stream flounder diets of the Northwest Atlantic have remained largely unexamined, except for a brief period from 1976 to 1980. To better understand their role in the ecosystem, juvenile through adult Gulf Stream flounder were examined both as a predator and prey, and the magnitude of their feeding footprint (removal of prey biomass) was quantified for the northeast U.S. continental shelf. Their stomachs were sampled from 2005 to 2010, with the majority examined in the field macroscopically. Due to large proportions of unidentifiable prey, the effort was expanded in 2011-2012, and all stomachs were processed in the laboratory microscopically. Gulf Stream flounder were consumed by 15 fish, and what they eat (percentage mass and percentage frequency of occurrence) was documented by season, spatial region and year. Highly benthivorous, Gammaridea and Polychaeta dominated the diet in all years, seasons and regions, but Ophiuroidea (brittle stars) were also prominent in Southern New England during the spring. Gulf Stream flounder diets remained consistent across regions and time, with only a few feeding differences between seasons and one region. Relative to the productivity of benthos for this shelf ecosystem, the feeding footprint of Gulf Stream flounder was minor for their predominant benthic prey with a maximum percentage of benthos production eaten of 0.01% m(-2) in Southern New England. With an ecosystem perspective, this feeding information offers a foundation for improving fisheries management among shared living marine resources considering benthic habitat and prey availability.

Understanding predator-prey interactions is critical for marine fisheries and ecosystem management as they shape community structure, regulate prey populations and present energy demands critical for community sustainability. We examined multispecies functional responses of 17 fishes (48 predator-size combinations) spanning piscivores, planktivores and benthivores for the northeast US continental shelf. Similar to previous work, linear relationships between predation and prey density (Holling type I response) were not supported, since model estimates of handling time were greater than zero for the prey considered. Instead, a clear majority of the predators sampled were Holling type III feeders (sigmoidal; prey switching or learning). For piscivores, nearly all responses were Holling type III with the exception of one being Holling type II (hyperbolic; satiation). Planktivores and benthivores exhibited a combination of type IV (feeding confusion at high prey density) and Holling type III responses. The relationships were predator- and prey-dependent, which is counter to assumptions that are often made of trophic groups. Decreased predation at high prey densities (type IV response) present among planktivores and benthivores suggests an overestimation of predation can occur if ignored. This contrasts with fish and squid prey which primarily invoked a Holling type III response. Functional responses are key to modelling trophic interactions for multispecies and ecosystem models. By refining these inputs in a multispecies context with empirical data, we can advance our understanding of whole-shelf ecology and improve decision-making tools for resource management.

AbstractConventional observations show spiny dogfish (Squalus acanthius Linnaeus) rarely eat Atlantic cod (Gadus morhua Linnaeus; 0.02% of stomachs) in the northwestern Atlantic Ocean. Critics express concern that digestion may limit species‐level prey identification, and with recovery from overfishing, dogfish populations may be suppressing cod by competition or predation. This study applied a real‐time PCR TaqMan assay to identify cod in dogfish stomachs collected by cooperating fishing boats during normal trawling operations (May 2014–May 2015; Gulf of Maine, Georges Bank). Conventional methods observed 51 different prey taxa and nearly 1,600 individual prey items, but no cod were observed. Cod DNA was detected in 31 (10.5%) of the dogfish stomachs, with a higher percentage of these from the homogenate of amorphous, well‐digested prey and stomach fluids (20 stomachs or 65%) than from discrete animal tissues (11 stomachs or 35%). Re‐examination of photographs of these 11 tissue samples revealed one whole, partially digested fish that could be recognized in hindsight as cod. Cod DNA was observed in dogfish stomachs year round: in January (1 of 1 trip), February (1 of 1), May (1 of 3), June (0 of 1), July (3 of 4), August (1 of 2), and October (3 of 3). Although these data suggest higher interaction rates between dogfish and cod than previously observed, addressing the population consequences of this predator–prey relationship requires a robust sampling design, estimates of digestion rates by dogfish to account for complete degradation of DNA sequences, and consideration for dogfish scavenging during fishing operations.

Increases in gelatinous zooplankton (GZ) populations, their dominance of some ecosystems, their impacts to other taxa, and their questionable trophic value remain global concerns, but they are difficult to quantify. We compared trends in GZ abundance from direct sampling for the northeast U.S. continental shelf and tested their association with GZ consumption by spiny dogfish (Squalus acanthias); the abundance of two benthic scavengers: Atlantic hagfish (Myxine glutinosa) and grenadiers (Family: Macrouridae); and four environmental indices: Atlantic Multidecadal Oscillation, North Atlantic Oscillation, and sea surface and bottom temperatures. Defined as scyphozoans, siphonophores, ctenophores, and salps, the abundance of GZ on the shelf has oscillated with blooms approximately every 10–15 yr. Conservative estimates of annual removal of GZ by spiny dogfish ranged from approximately 0.3–298 g individual−1 with spiny dogfish being the primary GZ feeder sampled on the shelf. The examination of three abundance series for GZ identified one shelf-wide trend and strong relationships with 2-yr lagged consumption and scavenger abundance (namely hagfish), and sea surface temperature. With multimodel inference, these covariates led to an optimal model of GZ abundance. Blooms of GZ abundance on this shelf were influenced by environmental change, provide surges of food for spiny dogfish, and may offer ‘food falls’ for scavenging fishes. The bioenergetic tradeoffs of consuming greater amounts of GZ compared to other major prey (e.g., fishes) remain unknown; however, these surges of food in the northwest Atlantic appear to be important for fishes, including support for benthic scavenger productivity.

In the northwest Atlantic, concerns for the benthic communities of Georges Bank have evolved following the widespread detection of the invasive ascidian Didemnum vexillum in 2002. One question is whether D. vexillum affects the feeding of fishes, particularly commercially-important species. The major objectives were to examine the diets of five demersal fishes and the benthic epifauna (prey field) across contrasting levels of D. vexillum occurrence from 2004 to 2008 in and around northern Closed Area II of Georges Bank (42.0°N, 67.3°W). The fishes examined were winter skate (Leucoraja ocellata), little skate (Leucoraja erinacea), haddock (Melanogrammus aeglefinus), winter flounder (Pseudopleuronectes americanus), and longhorn sculpin (Myoxocephalus octodecemspinosus). Cumulative fish trophic diversity was often higher at sites where D. vexillum was present as measured by Shannon's H′. Diets were significantly different across levels of D. vexillum for the five fishes, and feeding by haddock was positively correlated with the benthic epifauna within rather than across sites, indicating site-specific feeding. For many fishes, prey that contributed to the diet dissimilarity between sites were benthic epifauna strongly associated with the presence of D. vexillum (Class Polychaeta: Nereis zonata, Harmothoe extenuata, and Lepidonotus squamatus; and Order Decapoda: Cancer irroratus) and absence of D. vexillum (Order Decapoda: Crangon septemspinosa). These feeding alterations are not necessarily negative, as fish diets in this region regularly contain prey positively associated with D. vexillum. However, with the momentum to incorporate habitat science into fish stock assessments, managers should not consider protected fish habitat to be static in the presence of habitat modifiers such as invasive ascidians. From influencing the trophic ecology of demersal fishes to driving substrate homogeneity, long-term monitoring and invasive ascidian management for this continental shelf region is recommended.

Shifts in the distribution and aggregation patterns of exploited fish populations can affect the behavior and success of fishermen and can complicate the interpretation of fisheries-dependent data. Starting in 2006, coinciding with an increase in sand lance (Ammodytes spp.) abundance, Gulf of Maine Atlantic cod (Gadus morhua) concentrated on Stellwagen Bank, a small (405 km2) underwater plateau located in the southwestern portion of the larger (52 461 km2) stock area. The cod fishery in turn concentrated on Stellwagen Bank. Specifically, the proportion of Gulf of Maine cod landings caught in a single 10-minute square area (260 km2) encompassing the tip of Stellwagen Bank increased from 12% in 2005 to 45% in 2010. An increase in landings per unit effort in the fishery coincided with the concentration of the fleet on Stellwagen Bank. Overall, both fisheries-independent and fisheries-dependent data indicate that an increase in sand lance abundance resulted in cod aggregating in a small and predictable area where they were easily caught by the fishery. More broadly, this work illustrates how changes in the distribution patterns of fish and fisherman can decouple trends in abundance and fisheries catch per unit effort.