Gestating Angus, nonlactating, spring-calving cows were used to determine variation in maintenance energy requirements (MR); to evaluate the relationship among MR and cow and calf performance, plasma concentrations of IGF-I, T4, glucose, insulin, and ruminal temperature; and to describe the LM proteome and evaluate protein abundance in cows with different MR. Cows (4 to 7 yr of age) with a BCS of 5.0 ± 0.2 and BW of 582 ± 37 kg in the second to third trimester of gestation were studied in 3 trials (trial 1, n = 23; trial 2, n = 32; trial 3, n = 38). Cows were individually fed a complete diet in amounts to meet predicted MR (Level 1 Model of NRC), and feed intake was adjusted weekly until constant BW was achieved for at least 21 d (maintenance). Cows were classified on the basis of MR as low (>0.5 SD less than mean, LMR), moderate (±0.5 SD of mean, MMR), or high (>0.5 SD more than mean, HMR) MR. Blood samples were taken at maintenance and at 2 mo postpartum in trial 2. Muscle biopsies were taken from LMR and HMR after cows consumed actual MR for 28 d (trial 2) or 21 d (trial 3). Proteins from LM were separated by 2-dimensional difference gel electrophoresis and were identified, and abundance was quantified and compared. The greatest differences in MR between cows were 29%, 24%, and 25% in trials 1, 2, and 3, respectively. Daily MR (NEm, kcal·BW(-0.75)·d(-1)) averaged 89.2 ± 6.3, 93.0 ± 4.9, and 90.4 ± 4.6 in trials 1, 2, and 3, respectively. Postpartum BW and BCS, calf birth and weaning weights, postpartum luteal activity, and ruminal temperature were not influenced by MR of the cows. Concentrations of IGF-I were greater (P = 0.001) in plasma of MMR compared with LMR cows consuming predicted MR diets, and MR was negatively correlated with concentrations of IGF-I in plasma (r = -0.38; P = 0.05) at 2 mo postpartum. A total of 103 proteins were isolated from LM; 52 gene products were identified. Abundance of specific proteins in the LM was not influenced (P > 0.11) by MR. Variation in MR of cows will make it possible to improve feed efficiency by selection. Identification of biomarkers for MR will allow selection of more efficient cows, which consume less feed and produce calves with similar weaning weights. Productive cows that require less feed for maintenance will improve efficiency of production and enhance sustainability of the environment.

Fall-calving Angus cows were used to evaluate the effect of ambient temperature on duration of gestation. In Exp. 1, cows were AI and calved in August (n = 14) or October (n = 10). Cows grazed native prairie pasture in Oklahoma and had a BCS of 6.0 ± 0.5 (1 = emaciated, and 9 = obese) at parturition. Commencing 2 wk before the expected calving date, blood samples were taken from the coccygeal vein every 2 to 3 d until calving. Cows that calved in August tended to have shorter gestations (P = 0.07) compared with cows that calved in October. Maximum daily ambient temperature during the last 14 d of gestation was greater for August-calving cows (P < 0.001) compared with October cows. Concentrations of cortisol in plasma during the last 4 d of gestation were greater in cows that calved in August (P < 0.04) compared with cows that calved in October. In Exp. 2, cows were AI and calved in either mid-August (n = 7), late-August (n = 6), September (n = 6), or October (n = 8) to evaluate the effects of elevated ambient temperature on duration of gestation, ruminal temperature at parturition, and plasma cortisol, progesterone, and estradiol. Temperature boluses (SmartStock, LLC, Pawnee, OK) programmed to transmit temperature every hour were place in the rumen at 255 d of gestation. Cows grazed native prairie pasture in Oklahoma and had a BCS of 6.5 ± 0.4 at calving. Maximum ambient temperatures during d 263 to 273 of gestation were influenced by month of calving × day (P < 0.001). Duration of gestation was shorter for mid-August cows (P < 0.05) compared with October cows, but did not differ compared with late-August (P = 0.29) and September (P = 0.50) cows. Ruminal temperature during the 4 d before calving was not influenced by month of calving (P = 0.76). Ruminal temperature was decreased during the 24 h before parturition for cows in all months (P < 0.01) compared with 2 to 4 d before parturition. Concentrations of cortisol in plasma during d 271 to 276 of gestation were less (P < 0.05) for late-August compared with cows that calved during the other months. Concentrations of progesterone were greater during 7 d before parturition in October compared with cows that calved in September. Estradiol in plasma of cows during late gestation was not affected by month of calving (P = 0.76). Exposure of beef cows to elevated ambient temperature resulted in shorter gestations. Ruminal temperature in cows decreased ≥ 0.3°C the day before parturition.

CRYSTAL is an ab initio electronic structure program, based on the linear combination of atomic orbitals, for periodic systems. This paper concerns the ability of CRYSTAL to exploit massively parallel computer hardware. A brief review of the theory, numerical implementations and parallel solutions will be given and some of the functionalities and capabilities highlighted. Some features that are unique to CRYSTAL will be described and development plans outlined.

Hybrid exchange density functional theory is used to model defects on the beta-AlF(3) (100) surface. The stability of the surface with respect to the diffusion of surface F ions is investigated. It is shown that under typical reaction conditions (600 K) the surface is not kinetically hindered from reaching thermodynamic equilibrium. A reaction mechanism for the catalysis of 2CCl(2)F(2)--> CClF(3) + CCl(3)F is proposed. The mechanism and corresponding reaction barriers are calculated using a double-ended transition state search method. It is predicted that the processes that determine the overall reaction rate occur at defect sites.

Cartilage tissue repair procedures currently under development aim to create a construct in which patient-derived cells are seeded and expanded ex vivo before implantation back into the body. The key challenge is producing physiologically realistic constructs that mimic real tissue structure and function. One option with vast potential is to print strands of material in a 3D structure called a scaffold that imitates the real tissue structure; the strands are composed of gel seeded with cells and so provide a template for cartilaginous tissue growth. The scaffold is placed in the construct and pumped with nutrient-rich culture medium to supply nutrients to the cells and remove waste products, thus promoting tissue growth. In this paper we use asymptotic homogenization to determine the effective flow and transport properties of such a printed scaffold system. These properties are used to predict the distribution of nutrient/waste products through the construct, and to specify design criteria for the scaffold that will optimize the growth of functional tissue.

An understanding of the phase stability of AlF3 surfaces as a function of their environment is an important prerequisite in the development of, and an ability to control, their catalytic properties. In this study, all electron hybrid-exchange density functional theory is used to calculate the structure and corresponding energies of several α-AlF3 surfaces. It is shown that the surfaces expose under-coordinated Al ions that are potential Lewis acid sites. The binding energy of NH3 to these sites is calculated and used to quantify their relative acidities. The Lewis acid sites are significantly weaker than the strongest sites predicted to occur on β-AlF3 surfaces. The equilibrium morphology of α-AlF3 crystallites is predicted from the construction of an approximate Wulff plot. The stabilities of two representative terminations of α-AlF3, as a function of HF and H2O chemical potentials are computed using ab initio thermodynamics. The geometries of their stable surfaces are found to be strongly dependent on the environmental conditions.

An understanding of the phase stability of AlF3 surfaces as a function of their environment is an important prerequisite in the development of, and an ability to control, their catalytic properties. In this study, all electron hybrid-exchange density functional theory is used to calculate the structure and corresponding energies of several alpha-AlF3 surfaces. It is shown that the surfaces expose under-coordinated Al ions that are potential Lewis acid sites. The binding energy of NH3 to these sites is calculated and used to quantify their relative acidities. The Lewis acid sites are significantly weaker than the strongest sites predicted to occur on beta-AlF3 surfaces. The equilibrium morphology of alpha-AlF3 crystallites is predicted from the construction of an approximate Wulff plot. The stabilities of two representative terminations of alpha-AlF3, as a function of HF and H2O chemical potentials are computed using ab initio thermodynamics. The geometries of their stable surfaces are found to be strongly dependent on the environmental conditions.

The recently discovered high surface area AlF3 catalyst is characterised with respect to surface composition and structure using calculations based on density functional theory. Under typical reaction conditions the surfaces are found to expose five fold coordinated Al reaction centres and to preferentially adsorb water. The acidic centres are probed using NH3 adsorption which binds strongly indicating strong Lewis acidity. The predicted temperature probed desorption spectrum has features from competing surfaces and features due to strong intermolecular interactions, which are used to interpret the observed spectrum.

The current study employs hybrid-exchange density functional theory to investigate the adsorption of HF and HCl to under-coordinated Al ions on the beta-AlF3 ( 100) surface. It is shown that the geometries of the adsorbates are strongly dependent on coverage. Furthermore, the adsorption of HCl leads to a number of distinct structures that have very similar energies. It is proposed that this result may explain the high catalytic activity of aluminium fluoride and aluminium chloro-fluoride surfaces towards chlorine-fluorine exchange reactions. The stretching and bending frequencies of the H-F and H-Cl bonds at half and full monolayer coverage are also calculated and the vibrational spectrum is found to be strongly dependent on the adsorption site and the coverage. The vibrational frequency shifts provide, therefore, a mechanism for experimentally characterising these surfaces.

The current study employs hybrid-exchange density functional theory to show that the Lewis base, NH(3), binds to the beta-AlF(3) (100) surface with a binding energy (BE) of up to -1.96 eV per molecule. This is characteristic of a strong Lewis acid. The binding of NH(3) to the surface is predominately due to electrostatic interactions. There is only a small charge transfer from the NH(3) molecule to the surface. The BE as a function of coverage is computed and used to develop a lattice Monte Carlo model which is used to predict the temperature programed desorption (TPD) spectrum. Comparison with experimental TPD studies of NH(3) from beta-AlF(3) strongly suggests that these structural models and binding mechanisms are good approximations to those that occur on real AlF(3) surfaces.

The current study employs state of the art hybrid-exchange density functional theory (DFT) to investigate the Lewis acidic sites on the β-AlF3 (100) surface. It is shown that the strong Lewis base, NH3, binds to the surface with a binding energy of up to 1.9 eV. This demonstrates that the material is strongly Lewis acidic. We also consider the binding of the weak Lewis base CO to the surface. We calculate the shift in its stretch frequency compared to the gas phase molecule. Shifts are compared to experimental data and are shown to be typical of strong Lewis acidity.

First principles simulations of steps on the β-AlF3 (100) surface between two, previously identified, low-energy terminations have been performed. The optimization of these structures leads to the formation of microfacets having the (010) orientation. The microfaceted surface is found to have a lower surface energy than either of the low-energy terminations used to construct the model stepped system. This suggests that the (100) surface is not, thermodynamically, the most stable termination of β-AlF3. We have therefore also investigated the structure and stability of the (010) and (001) surfaces and find that both of these surfaces are lower in energy than the (100) surfaces. The surface energies of these planes are used to construct an approximate Wulff plot and thus predict the equilibrium crystal morphology.

The methodology for the calculation of the phase stability of different surfaces in contact with a multi component environment of gases is presented. The evaluation of the surface free energy of a system is discussed in detail including the use of thermodynamic data tables.

Thermodynamic calculations based on hybrid-exchange density functional theory are used to predict the surface structure and stability of α-AlF3 (011¯2) in the presence of gaseous HF and H2O environments. The clean stoichiometric α-AlF3 (011¯2) is predicted to be Lewis acidic. However, under most reaction conditions this surface is unstable with respect to the adsorption of hydroxyl ions. This is consistent with experimental observations. It is predicted that the surface containing no hydroxyl ions could only be realised at high temperatures and under unrealistically dry conditions.

Grid computing is becoming an increasingly important way fo r c mputational scientists to access computer resources. However, there is currently no consensus on the opt imum middleware for providing access to these resources, or even a uniform way for users to interact with a particular m iddleware solution. As part of our work on the NWGRID project, and in our development of our CCP1 GUI software , w have had cause to use two of these solutions (Globus and NorduGrid ARC), together with various client-s ide tools that are under development to support them. This paper describes our experiences to date with these diff erent solutions, and work that has been carried out using some of them.

Solid aluminium fluorides have great potential for use in a range of reactions that are catalysed by strong Lewis acids. However, very little is known about the detailed atomic scale structure of their surfaces. We present new results for the surface structure of beta-AlF3 based on first principles simulation and compare these with our earlier work on alpha-AlF3. On the basis of these simulations we can explain the observed reactivity of the aluminium fluoride materials. We can also use these results to postulate a mechanism for the observed high reactivity shown by amorphous, 'high-surface area' AlF3.

Aluminum chloride is used extensively as Lewis acid catalyst in a variety of industrial processes, including Friedel-Crafts and Cl/F exchange reactions. There is a common misconception that pure AlCl3 is itself a Lewis acid. In the current study, we use experimental and computational methods to investigate the surface structure and catalytic properties of solid AlCl3. The catalytic activity of AlCl3 for two halide isomerization reactions is studied and compared with different AlF3 phases. It is shown that pure solid AlCl3 does not catalyze these reactions. The (001) surface of crystalline AlCl(3) is the natural cleavage plane and its structure is predicted via first principles calculations. The chlorine ions in the outermost layer of the material mask the Al3+ ions from the external gas phase. Hence, the experimentally found catalytic properties of pure solid AlCl3 are supported by the predicted surface structure of AlCl3.

Strong Lewis acid catalysts are widely used in a variety of industrial processes including Cl/F exchange reactions. Aluminum fluorides (AlF3) have great potential for use in such reactions. Despite the importance of the surface in the catalytic process little is known about the detailed atomic scale structure of AlF3 surfaces. In the current study we employ state of the art surface thermodynamics calculations based on hybrid-exchange density functional theory to predict the composition and structure of the basal plane surface of alpha-AlF3 for the first time. We examine four possible terminations of the alpha-AlF3 (0001) surface and demonstrate that the surface is terminated by a layer containing two fluorine atoms per cell at all realistic fluorine partial pressures. The fluorine ions in the outermost layer of the material reconstruct to mask the Al3+ ion from the external gas phase and consequently we would expect this surface to be inactive as a Lewis acid catalyst in line with experimental observation.