Cloning procedures often interfere with conceptus growth and life ex utero, in a set of symptoms known as abnormal offspring syndrome (AOS). The aim of the present study was to compare the developmental pattern of in vivo-derived (IVD), IVF-derived and handmade cloning-derived (NT-HMC) Day 225 bovine concepti using established procedures. Pregnancy diagnosis was performed on Day 30 following blastocyst transfer on Day 7. Conceptus morphometry was assessed by ultrasonography on Day 51, and on Day 225 pregnant cows were killed for morphological examination of concepti. Pregnancy outcome was similar between groups, with greater pregnancy losses in the first trimester (70.6%) and smaller fetuses on Day 51 in the NT-HMC group than in the IVD (14.3%) and IVF (20.0%) groups. However, NT-HMC-derived concepti were twofold larger on Day 225 of gestation than controls. A higher frequency (63.5%) of placentomes larger than the largest in the IVD group was observed in the NT-HMC group, which may be relevant to placental function. Conceptus traits in the IVF group were similar to the IVD controls, with only slight changes in placentome types. Morphological changes in cloned concepti likely affected placental function and metabolism, disrupting the placental constraining mechanism on fetal growth in mid- to late pregnancy.

With the high cost of feed for animal production, genetic selection for animals that metabolize feed more efficiently could result in substantial cost savings for cattle producers. The purpose of this study was to identify DNA markers predictive for differences among cattle for traits associated with feed efficiency. Crossbred steers were fed a high-corn diet for 140 days and average daily feed intake (ADFI), average daily gain (ADG), and residual feed intake (RFI) phenotypes were obtained. A region on chromosome 14 was previously associated with RFI in this population of animals. To develop markers with the highest utility for predicting an animal's genetic potential for RFI, we genotyped additional markers within this chromosomal region. These polymorphisms were genotyped on the same animals (n = 1066) and tested for association with ADFI, ADG and RFI. Six markers within this region were associated with RFI (P ≤ 0.05). After conservative correction for multiple testing, one marker at 25.09 Mb remained significant (P = 0.02) and is responsible for 3.6% of the RFI phenotypic variation in this population of animals. Several of these markers were also significant for ADG, although none were significant after correction. Marker alleles with positive effects on ADG corresponded to lower RFI, suggesting an effect increasing growth without increasing feed intake. All markers were also assessed for their effects on meat quality and carcass traits. All of the markers associated with RFI were associated with adjusted fat thickness (AFT, P ≤ 0.009) and three were also associated with hot carcass weight (HCW, P ≤ 0.003). Marker alleles associated with lower RFI were also associated with reduced AFT, and if they were associated for HCW, the effect was an increase in weight. These markers may be useful as prediction tools for animals that utilize feed more efficiently; however, validation with additional populations of cattle is required.

Feed cost for beef cattle is the largest expense incurred by cattle producers. The development of genetic markers to enhance selection of more efficient animals that require less feed while still achieving acceptable levels of production has the potential to substantially reduce production costs. A genome-wide marker association approach based on the Illumina BovineSNP50 BeadChip™ was used to identify genomic regions affecting average daily feed intake (ADFI), average daily gain (ADG) and residual feed intake traits in a population of 1159 crossbred steers. This approach identified a region on BTA14 from 22.02 to 23.92 Mb containing several single-nucleotide polymorphisms (SNPs) that have significant association with at least one of the traits. Two genes in this region, lysophospholipase 1 (LYPLA1) and transmembrane protein 68 (TMEM68), appeared to be logical positional and functional candidate genes. LYPLA1 deacylates ghrelin, a hormone involved in the regulation of appetite in the rat stomach, while TMEM68 is expressed in bovine rumen, abomasum, intestine and adipose tissue in cattle, and likely affects lipid biosynthetic processes. SNPs lying in or near these two genes were identified by sequencing a subset of animals with extreme phenotypes. A total of 55 SNPs were genotyped and tested for association with the same population of steers. After correction for multiple testing, five markers within 22.79-22.84 Mb, located downstream of TMEM68, and between TMEM68 and the neighbouring gene XKR4, were significant for both ADFI and ADG. Genetic markers predictive of feed intake and weight gain phenotypes in this population of cattle may be useful for the identification and selection of animals that consume less feed, although further evaluation of these markers for effects on other production traits and validation in additional populations will be required.

The effects of individual SNP and the variation explained by sets of SNP associated with DMI, metabolic midtest BW, BW gain, and feed efficiency, expressed as phenotypic and genetic residual feed intake, were estimated from BW and the individual feed intake of 1,159 steers on dry lot offered a 3.0 Mcal/kg ration for at least 119 d before slaughter. Parents of these F(1) × F(1) (F(1)(2)) steers were AI-sired F(1) progeny of Angus, Charolais, Gelbvieh, Hereford, Limousin, Red Angus, and Simmental bulls mated to US Meat Animal Research Center Angus, Hereford, and MARC III composite females. Steers were genotyped with the BovineSNP50 BeadChip assay (Illumina Inc., San Diego, CA). Effects of 44,163 SNP having minor allele frequencies >0.05 in the F(1)(2) generation were estimated with a mixed model that included genotype, breed composition, heterosis, age of dam, and slaughter date contemporary groups as fixed effects, and a random additive genetic effect with recorded pedigree relationships among animals. Variance in this population attributable to sets of SNP was estimated with models that partitioned the additive genetic effect into a polygenic component attributable to pedigree relationships and a genotypic component attributable to genotypic relationships. The sets of SNP evaluated were the full set of 44,163 SNP and subsets containing 6 to 40,000 SNP selected according to association with phenotype. Ninety SNP were strongly associated (P < 0.0001) with at least 1 efficiency or component trait; these 90 accounted for 28 to 46% of the total additive genetic variance of each trait. Trait-specific sets containing 96 SNP having the strongest associations with each trait explained 50 to 87% of additive variance for that trait. Expected accuracy of steer breeding values predicted with pedigree and genotypic relationships exceeded the accuracy of their sires predicted without genotypic information, although gains in accuracy were not sufficient to encourage that performance testing be replaced by genotyping and genomic evaluations.

Growth, feed intake, and temperament indicator data, collected over 5 yr on a total of 1,141 to 1,183 mixed-breed steers, were used to estimate genetic and phenotypic parameters. All steers had a portion of Hereford, Angus, or both as well as varying percentages of Simmental, Charolais, Limousin, Gelbvieh, Red Angus, and MARC III composite. Because the steers were slaughtered on various dates each year and the animals thus varied in days on feed, BW and feed data were adjusted to a 140-d feeding period basis. Adjustment of measures of feed efficiency [G:F or residual feed intake (RFI), intake adjusted for metabolic body size, and BW gain] for body fatness recorded at slaughter had little effect on the results of analyses. Average daily gain was less heritable (0.26) than was midtest BW (MBW; 0.35). Measures of feed intake had greater estimates of heritability, with 140-d DMI at 0.40 and RFI at 0.52; the heritability estimate for G:F was 0.27. Flight speed (FS), as an indicator of temperament, had an estimated heritability of 0.34 and a repeatability of 0.63. As expected, a strong genetic (0.86) correlation was estimated between ADG and MBW; genetic correlations were less strong between DMI and ADG or MBW (0.56 and 0.71). Residual feed intake and DMI had a genetic correlation of 0.66. Indexes for phenotypic RFI and genotypically restricted RFI (no correlation with BW gain) were compared with simple economic indexes incorporating feed intake and growth to elucidate expected selection responses under different criteria. In general, few breed differences were detected across the various measurements. Heterosis contributed to greater DMI, RFI, and MBW, but it did not significantly affect ADG, G:F, or FS. Balancing output (growth) with input costs (feed) is needed in practicing selection, and FS would not be recommended as an indicator trait for selection to change feed efficiency. An index including BW gain and RFI produced the best economic outcome.

Table S1 SNP identified in GHSR and SLC2A2 in USMARC steers with extreme ADFI and ADG phenotypes. Table S2 Association analysis and estimated effects of markers located within and near GHSR and SLC2A2. As a service to our authors and readers, this journal provides supporting information supplied by the authors. Such materials are peer-reviewed and may be re-organized for online delivery, but are not copy-edited or typeset. Technical support issues arising from supporting information (other than missing files) should be addressed to the authors. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.

Table S1 Summary of Bovine SNP50 BeadChip SNP on BTA11: 74.9-77.9 associated with ADMI and ADG. Table S2 SNPs in the POMC gene and 5’ upstream region identified in crossbred steers. Table S3 SNP marker associations and estimated additive effects. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.

Records of individual feed intake (FI) and BW gain (GN) were obtained from the Germ Plasm Evaluation (GPE) program at US Meat Animal Research Center (USMARC). Animals were randomly assigned to pens. Only pens with 6 to 9 steers (n = 289) were used for this study (data set 1). Variance components and genetic parameters were estimated using data set 1. Estimated genetic values (EGV) for FI were calculated by 5 methods using single and 2-trait analyses: 1) individual FI and individual GN, 2) individual FI alone, 3) 2-trait with individual GN but with FI missing, 4) individual GN and pen total FI, and 5) pen total FI alone. Analyses were repeated but with some of the same records assigned artificially to 36 pens of 5 and 4 paternal half sibs per pen (data sets 2 and 3). Models included year as a fixed factor and birth and weaning weights, age on test, and days fed as covariates. Estimates of heritability were 0.42 +/- 0.16 and 0.34 +/- 0.17 for FI and GN. The estimate of the genetic correlation was 0.57 +/- 0.23. Empirical responses to selection were calculated as the average EGV for the top and bottom 10% based on rank for each method but with EGV from method 1 substituted for the EGV on which ranking was based. With data set 1, rank correlations between EGV from method 1 and EGV from methods 2, 3, 4, and 5 were 0.99, 0.53, 0.32, and 0.15, respectively. Empirical responses relative to method 1 agreed with the rank correlations. Accuracy of EGV for method 4 (0.44) was greater than for method 3 (0.35) and for method 5 (0.29). Accuracies for methods 4 and 5 were greater than indicated by empirical responses and correlations with EGV from method 1. Comparisons of the 5 methods were similar for data sets 2 and 3. With data set 2, rank correlations between EGV from method 1 and EGV from methods 3, 4, and 5 were 0.47, 0.64, and 0.62. Average accuracies of 56, 75, and 75% relative to method 1 (0.67) generally agreed with the empirical responses to selection. As expected, accuracy using pen total FI and GN to obtain EGV for FI was greater than using GN alone. With data set 1, empirical response to selection with method 4 was one-third of that for method 1, although average accuracy was 65% of that for method 1. With assignment of 5 paternal half sibs to artificial pens, using pen total FI and individual GN was about 81% as effective for selection as using individual FI and GN to obtain EGV for FI and was substantially more effective than use of GN alone.

Herd level manure nitrogen (N) excretion can be predicted using the Cornell Net Carbohydrate and Protein System (CNCPS). Partitioning of urinary and fecal N is important, especially for predicting air emissions. The objective of this study was to compare CNCPS predictions for fecal N (FN) and urinary N (UN) with published data. Studies (n=24) were selected that measured FN and UN by total collection, presented adequate dietary information, and accounted for >85% of the N intake (NI). Individual diets were dropped if the unaccounted N was > 0.5 SD from the mean. Diets in the resulting data set (n=68) accounted for 94%±3% (mean±SD) of the NI. Crude protein content, dry matter intake and milk production ranged from 12.6-21%DM, 14-27.2kg/cow/day and 18.1-46.1kg/cow/day, respectively. Data was analyzed using a mixed model in JMP where study was included as a random variable. Additional assessments of model accuracy and precision were completed for FN and UN (CCC, MSPE; Table 1). Observed and model predicted NI or Milk N (MN) were not different (P > 0.05). The CNCPS calculates UN by subtracting MN and FN from NI. Both, NI and MN are easily quantifiable making the prediction of FN crucial in establishing the correct partitioning of manure N. In this evaluation, FN was predicted with high precision (r2=0.94, b=0.01), but lacked accuracy (CCC=0.75, a=0.22). The lack of model accuracy was exaggerated by studies accounting for less than 100% of the NI. However, high precision, but poor accuracy suggests a calibration problem where FN is being over predicted (10%).

The objective of this study was to determine if wet distillers grains with solubles (WDGS) from corn in diets affected Escherichia coli O157:H7 in growing and finishing cattle; steers (n = 603) were randomly assigned to diets with or without WDGS. Hide and fecal samples were collected monthly (October through June) from each animal for enumeration and enrichment of E. coli O157:H7. In the growing phase (0 or 13.9% WDGS diets), fecal prevalence for E. coli O157:H7 in steers fed a diet with WDGS was twice that of the prevalence in control steers (P < 0.001). In the finishing phase (0 or 40% WDGS diets), the average prevalence in feces (P < 0.001) and on hides (P < 0.001) was higher for cattle fed WDGS. The average percentage of fecal E. coli O157:H7 enumerable samples during the finishing phase for cattle fed WDGS was 2.7% compared with 0.1% for control steers (P < 0.001). The average percentage of E. coli O157:H7 enumerable hide samples was not different between diets, but the cattle fed WDGS had higher levels (P < 0.05) of the pathogen. Animals fed WDGS had higher levels of E. coli (P < 0.001), higher pH values (P < 0.001), and lower concentrations of L-lactate (P < 0.001) in feces than those values of the control steers. These results indicate that feeding 40% WDGS could increase the level and prevalence of E. coli O157:H7 in and on feedlot cattle when E. coli O157:H7 is seasonally low.

The development of energetic efficiency concepts followed a recognized pattern of knowledge evolution that began with novel insights leading to cre- ative new concepts. The second phase integrated con- cepts from other fields to create new applicable princi- ples. The third phase was the adoptive or dissemination phase, yielding solutions to industry or societal prob- lems. It is our contention that animal energetics has been in the adoptive phase for approximately 100 yr. Concepts developed during the early phase of nutri- tional energetics included the concept that life is a com- bustion process, the laws of thermodynamics, and the Law of Hess. Subsequent efforts established relation- ships between gas exchange and heat production and established the concept that food not only functions as fuel, but also as a body-building material. Much of the research effort for the last 100 yr has been to 1) devise bases for evaluation of foods that could be related to energy requirements and energy expenditures and 2) establish causes of energy expenditures. Much of the effort has focused on general and broadly applicable

Sixty growing 3/4 Boer x 1/4 Spanish (BS) and Spanish (SP) wethers were used to determine influences of diet and breed on growth and body composition. A pelleted 50% concentrate diet (CD) and a diet based on grass hay (HD) were fed for ad libitum intake. Six wethers of each breed were slaughtered at 0 wk (total of 12). Six wethers of each diet-breed combination were slaughtered at 14 and 28 wk (24 per time) after consumption of the CD or HD. Initial BW of fed wethers were 21.6 and 18.8 kg for BS and SP, respectively (SEM = 0.7). Average daily gain during the entire experiment was influenced by an interaction (P < 0.05) between breed and diet (199, 142, 44, and 50 g/d for BS:CD, SP:CD, BS:HD, and SP:HD, respectively). Carcass mass was greater (P < 0.05) for CD vs. HD (56.2, 56.2, 53.2, and 54.0% of empty BW for BS:CD, SP:CD, BS:HD, and SP:HD, respectively). Mass of the liver (2.11, 1.92, 2.00, and 1.98% of empty BW; SEM = 0.05) and gastrointestinal tract (5.50, 4.83, 8.43, and 8.36% of empty BW for BS:CD, SP:CD, BS:HD, and SP:HD, respectively; SEM = 0.16) tended (P < 0.07) to be influenced by an interaction between breed and diet. Mass of internal fat (12.2, 12.1, 3.4, and 3.4% empty BW for BS:CD, SP:CD, BS:HD, and SP:HD, respectively; SEM = 0.3) differed (P < 0.05) between diets. Energy in the carcass (320, 236, 87, and 79 MJ), noncarcass tissues (318, 237, 77, and 72 MJ), and empty body (638, 472, 164, and 150 MJ) ranked (P < 0.05) BS:CD > SP:CD > BS:HD and SP:HD. Empty body concentration of protein was 18.3, 17.5, 18.3, and 19.7% (SEM = 0.3) and of fat was 24.0, 23.4, 10.8, and 10.3% for BS:CD, SP:CD, BS:HD, and SP:HD, respectively (SEM = 0.6). Energy concentration in accreted tissue was 17.0, 18.7, 16.3, and 6.4 MJ/kg for CD:wk 1 to 14, CD:wk 15 to 28, HD:wk 1 to 14, and HD:wk 15 to 28, respectively (SEM = 1.4). In conclusion, relatively high growth potential of growing Boer crossbred goats with a moderate to high nutritional plane does not entail a penalty in realized growth when the nutritional plane is low. Body composition of growing Boer and Spanish goats is fairly similar regardless of growth rate. For growing meat goats other than with a prolonged limited nutritional plane, an average energy concentration in accreted tissue is 17.3 MJ/kg.

The objectives were to evaluate preweaning performance, body composition, and efficiency of calves representing straightbred Nellore (NL), F(1), and 3-breed-cross systems. Energy requirements, milk production, and efficiency of 39 cow-calf pairs were recorded from straightbred NL calves from NL cows (10), crossbred (Angus-sired) calves from NL cows (ANL: 9), and crossbred calves (CC; Canchim-sired: 5/8 Charolais, 3/8 Zebu) from ANL (10) and Simmental x NL (10) cows. Cows and their respective calves were individually fed from birth to weaning (17 to 190 d postpartum). At 38 d of age, corn silage (7.8% CP, 2.19 Mcal of ME/kg of DM) was available to calves ad libitum. Milk production at 42, 98, 126, and 180 d postpartum was recorded by weighing calves before and after suckling. The ratio between GE and ME of milk was considered 1:0.93. Calves were slaughtered at weaning and the 9th-, 10th-, and 11th-rib section was removed for body composition estimation. The ANL calves were lighter (P < 0.01) at birth than the CC calves; the NL calves were intermediate. At weaning, the CC calves were heavier (P = 0.04) than the NL and ANL calves (230 +/- 5.5 vs. 172 +/- 8.1 and 209 +/- 8.6 kg, respectively). The ANL calves had greater (371 +/- 27 Mcal; P = 0.01) silage intake than the NL (270 +/- 25 Mcal) and CC (279 +/- 17 Mcal) calves. Milk energy intake was greater for the CC calves (970 +/- 38 Mcal of ME; P = 0.005) than the NL (670 +/- 57 Mcal of ME) and ANL (743 +/- 61 Mcal of ME) calves. The ANL calves compensated for the reduced milk production of the NL cows, which supplied less of their energy requirement for growth by increased silage intake. Calves from crossbred cows received a greater proportion of their total energy intake from milk. Crossbred calves had greater (P < 0.03) retained energy (retained energy = weaning body energy - birth body energy) than the NL calves (388 +/- 23 for ANL, and 438 +/- 15 for CC vs. 312 +/- 22 Mcal for NL calves). Percentages of water (P = 0.74) and chemical fat (P = 0.51) were similar among groups (63.7 +/- 0.6 and 14.3 +/- 0.7% for ANL calves, 63.1 +/- 0.4 and 14.7 +/- 0.5% for CC calves, and 63.3 +/- 0.6 and 13.7 +/- 0.7% of empty BW for water and chemical fat, respectively, for NL calves). Energetic efficiency (kcal of retained energy/Mcal of ME intake) was similar (P = 0.52) among groups (358 +/- 22 for ANL calves, 355 +/- 14 for CC calves, and 327 +/- 22 for NL calves). The greater BW gains and the differences in empty body composition at weaning were not enough to compensate for the greater ME intake of crossbreds. In this study, the crossbreeding systems evaluated increased preweaning calf performance but did not affect gross or energetic calf efficiency.

The objective of the study was to measure net AA flux rates across the portal-drained viscera (PDV) and liver in the presence and absence of abomasal glucose infusion. Decreasing the fraction of AA metabolized by the mucosal cells may increase the fraction of AA being released into the blood. A potential mechanism to reduce AA catabolism by mucosal cells is to provide an alternative source of energy. We hypothesized that increasing glucose flow to the small intestine would increase net appearance of AA across the PDV. Eighteen mature ewes with sampling catheters were placed on study. The experimental design was a split-plot with a complete randomized design on the whole-plot and a Latin-square subplot with 5 periods and incremental levels of protein infusion. One-half of the ewes received abomasal glucose infusions (3.84 g/h), and all ewes received each of 5 protein abomasal infusion levels over 5 periods (0, 2.6, 5.2, 7.8, and 10.5 g/h). Net PDV release of isoleucine, leucine, methionine, phenylalanine, aspartate, glutamate, glutamine, proline, serine, and tyrosine increased linearly with increased protein infusion, and net PDV release of histidine, lysine, threonine, valine, alanine, and glycine did not differ with protein infusion. Net hepatic glucose release decreased with glucose infusion. With the exception of histidine, phenylalanine, and valine, net hepatic AA uptake increased linearly with increased delivery of AA to the liver. Glucose infusion increased the hepatic lysine and valine uptake and decreased phenylalanine uptake. Based on the observations in the current study, we reject our hypothesis that glucose can spare AA metabolism by PDV tissue. Our findings suggest that hepatic gluconeogenesis can be increased in the presence of increased AA delivery to the liver and that hepatic gluconeogenesis can be decreased with increased absorption of dietary glucose. Our findings support the concept that for most AA, hepatic transport of AA can be described by mass action kinetics; however, the rates of hepatic uptake of specific AA are upregulated directly or indirectly by elevated glucose.

Multiparous Alpine does (42) were used to determine how stage of lactation and dietary forage level affect body composition. The feeding and body composition portion of the study had a 2 x 3 factorial arrangement of treatments. Eighteen does were fed a 40% forage diet (40F) and 18 received a diet with 60% forage (60F) for approximately 2, 4, or 6 mo of lactation (59 +/- 1.3, 116 +/- 1.0, and 184 +/- 1.4 d, respectively), followed by determination of body composition (6 does per diet at each time of slaughter). Does were assigned sequentially to treatments as kidding occurred. The 60F diet had 20% more dehydrated alfalfa pellets than the 40F diet, with higher levels of corn and soybean meal and inclusion of supplemental fat in the 40F diet. Initial body composition measures were made with 6 other does a few days after kidding (0 mo; 4 +/- 0.6 d). Before parturition, does were fed a 50% concentrate diet free choice. Intake of dry matter was greater for 60F than for 40F, average daily gain tended to be affected by an interaction between diet and month (0, 24, 121, -61, 46, and 73 g), and 4% fat-corrected milk was less in mo 5 to 6 than earlier. Internal fat mass was greatest among times at 6 mo and greater for 40F than for 60F. Mass of the gastrointestinal tract was less for 40F than for 60F and decreased with increasing time in lactation. Concentrations of fat in the carcass (13.8, 13.1, 16.5, 11.2, 11.5, and 14.4%), noncarcass tissues (18.6, 24.2, 33.3, 14.3, 16.5, and 24.5%), and empty body (16.5, 18.7, 25.2, 12.9, 14.1, and 19.5% for 40F at 2 mo, 40F at 4 mo, 40F at 6 mo, 60F at 2 mo, 60F at 4 mo, and 60F at 6 mo, respectively) were affected by stage of lactation and diet. Based on daily change in tissue mass and energy, energy concentration in tissue mobilized or accreted was 16, 20, and 32 MJ/kg in 1 to 2, 3 to 4, and 5 to 6 mo of lactation, respectively. In conclusion, based on tissue mass, more energy was expended by the gastrointestinal tract with 60F than with 40F. Considerable internal fat appeared to be mobilized in early lactation, particularly with the diet moderate to high in forage, with more rapid and a greater magnitude of repletion by does consuming the diet lower in forage. The concentration of energy in tissue mobilized or accreted varied with stage of lactation, being considerably greater at 5 to 6 mo of lactation than earlier.

In this paper, I attempt to survey, categorize and characterize papers relevant to animal breeding and genetics that were published in the Journal of Animal Science between the initial issue in 1910 and 2008. Graphics and descriptive statistics will be presented that describe allocation of publication effort across species, space and time. I then endeavor to identify and describe the evolution of major themes in research, teaching and extension. When did they begin? How did they expand and contract? Did they mutate or metastasize? Which suffered extinction? Relationships and paths of influence among investigators and among institutions will also be examined. Finally, I will reflect upon changes during the century in the Journal of Animal Science and in the manner and style with which animal breeders and geneticists published their findings within its pages.