A series of isotopically labeled natural substrate analogues (phenyl 5-N-acetyl-α-d-neuraminyl-(2→3)-β-d-galactopyranosyl-(1→4)-1-thio-β-d-glucopyranoside; Neu5Acα2,3LacβSPh, and the corresponding 2→6 isomer) were prepared chemoenzymatically in order to characterize, by use of multiple kinetic isotope effect (KIE) measurements, the glycosylation transition states for Vibrio cholerae sialidase-catalyzed hydrolysis reactions. The derived KIEs for Neu5Acα2,3LacβSPh for the ring oxygen (18V/K), leaving group oxygen (18V/K), C3-S deuterium (DV/KS) and C3-R deuterium (DV/KR) are 1.029 ± 0.002, 0.983 ± 0.001, 1.034 ± 0.002, and 1.043 ± 0.002, respectively. In addition, the KIEs for Neu5Acα2,6βSPh for C3-S deuterium (DV/KS) and C3-R deuterium (DV/KR) are 1.021 ± 0.001 and 1.049 ± 0.001, respectively. The glycosylation transition state structures for both Neu5Acα2,3LacβSPh and Neu5Acα2,6LacβSPh were modeled computationally using the experimental KIE values as goodness of fit criteria. Both transition states are late with largely cleaved glycosidic bonds coupled to pyranosyl ring flattening (4H5 half-chair conformation) with little or no nucleophilic involvement of the enzymatic tyrosine residue. Notably, the transition state for the catalyzed hydrolysis of Neu5Acα2,6βSPh appears to incorporate a lesser degree of general-acid catalysis, relative to the 2,3-isomer.

A gene encoding a putative sialidase was identified in the genome of the opportunistic fungal pathogen, Aspergillus fumigatus. Computational analysis showed that this protein has Asp box and FRIP domains, it was predicted to have an extracellular localization, and a mass of 42 kDa, all of which are characteristics of sialidases. Structural modeling predicted a canonical 6-bladed beta-propeller structure with the model's highly conserved catalytic residues aligning well with those of an experimentally determined sialidase structure. The gene encoding the putative Af sialidase was cloned and expressed in Escherichia coli. Enzymatic characterization found that the enzyme was able to cleave the synthetic sialic acid substrate, 4-methylumbelliferyl alpha-D-N-acetylneuraminic acid (MUN), and had a pH optimum of 3.5. Further kinetic characterization using 4-methylumbelliferyl alpha-D-N-acetylneuraminylgalactopyranoside revealed that Af sialidase preferred alpha2-3-linked sialic acids over the alpha2-6 isomers. No trans-sialidase activity was detected. qPCR studies showed that exposure to MEM plus human serum induced expression. Purified Af sialidase released sialic acid from diverse substrates such as mucin, fetuin, epithelial cell glycans and colominic acid, though A. fumigatus was unable to use either sialic acid or colominic acid as a sole source of carbon. Phylogenetic analysis revealed that the fungal sialidases were more closely related to those of bacteria than to sialidases from other eukaryotes.

Methyl 4,6-O-benzylidene-α-D-glucopyranoside was converted into methyl 2-azido-2-deoxy-4,6-O-benzylidene-α-D-altropyranoside via a synthetic route that incorporated two inversions of configuration. Activation of the C-3 hydroxyl group as a triflate ester followed by an SN2 reaction with O-18 labeled benzoate gave, after standard functional group manipulations, 2-acetamido-2-deoxy-D-(3-18O)mannose. Coupling of the labeled N-acetyl-mannosamine with pyruvate was catalyzed by sialic acid aldolase to give ring-oxygen-labeled sialic acid in an overall yield of 11.4% over 10 steps.Key words: N-acetylneuraminic acid, sialic acid oxygen-18, chemoenzymatic.

Two isomeric 4-methylumbelliferyl-alpha-D-N-acetylneuraminylgalactopyranosides ( 1 and 2) were synthesised. These compounds contain either the natural alpha-2,3 or alpha-2,6 sialyl - galactosyl linkages, as well as an attached 4-methylumbelliferone for convenient detection of their hydrolyses. These compounds were designed as natural sialoside analogues to be used in a continuous assay of sialidase activity, where the sialidase-catalysed reaction is coupled with an exo-beta-galactosidase-catalysed hydrolysis of the released galactoside to give free 4-methylumbelliferone. The kinetic parameters for 1 and 2 were measured using the wild-type and nucleophilic mutant Y370G recombinant sialidase from Micromonospora viridifaciens. Kinetic parameters for these analogues measured using the new continuous assay were in good agreement with the parameters for the natural substrate, 3'-sialyl lactose. Given the selection of commercially available exo-beta-galactosidases that possess a variety of pH optima, this new method was used to characterise the full pH profile of the wild-type sialidase with the natural sialoside analogue 1. Thus, use of these new substrates 1 and 2 in a continuous assay mode, which can be detected by UV/Vis or fluorescence spectroscopy, makes characterisation of sialidase activity with natural sialoside linkages much more facile.

The Y370G inverting mutant sialidase from Micromonospora viridifaciens possesses beta-sialidase activity with phenyl beta-sialoside (Ph-betaNeuAc) to give alpha-sialic acid as the first formed product. The derived catalytic rate constants for k(cat) and k(cat)/K(m) are 13.3 +/- 0.3 and (2.9 +/- 0.3) x 10(5) M(-)(1) s(-)(1), respectively. This enzyme is highly specific for the phenyl substrate, with substituted phenyl and thiophenyl leaving groups having k(cat) values that are at least 1000-fold lower. In addition, the Y370G mutant can transfer the sialic acid moiety from Ph-betaNeuAc to lactose in yields of up to 13%. Greater than 90% of the sialyl-lactose product formed in the coupling reactions is the alpha-2,6-isomer. A library encoding 6 x 10(5) different sialidases was constructed by mutating Y370, E260, T309, N310, and N311, residues that include and are proximal the catalytic tyrosine residue. A total of 2628 individuals were screened for hydrolytic activity against 4-nitrophenyl 2-thio-beta-sialoside and 4-methylumbelliferyl beta-sialoside. However, none of the mutants screened possessed a significant activity against either of the beta-sialosides.

ADVERTISEMENT RETURN TO ISSUEPREVCommunicationNEXTThe 5-Thioglucopyranosyl Carbenium Ion Is a Solvent-Equilibrated CationBlair D. Johnston, Deepani Indurugalla, B. Mario Pinto, and Andrew J. BennetView Author Information Department of Chemistry, Simon Fraser University 8888 University Drive, Burnaby British Columbia V5A 1S6, Canada Cite this: J. Am. Chem. Soc. 2001, 123, 50, 12698–12699Publication Date (Web):November 17, 2001Publication History Received19 September 2001Published online17 November 2001Published inissue 19 December 2001https://pubs.acs.org/doi/10.1021/ja017118fhttps://doi.org/10.1021/ja017118frapid-communicationACS PublicationsCopyright © 2001 American Chemical SocietyRequest reuse permissionsArticle Views411Altmetric-Citations6LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (1)»Supporting Information Supporting Information SUBJECTS:Anions,Azides,Ions,Kinetic parameters,Substitution reactions Get e-Alerts

The following kinetic isotope effects, KIEs (k(light)/k(heavy)), have been measured for the hydrolyses of methyl alpha- and beta-xylopyranosides, respectively, in aqueous HClO(4) (mu = 1.0 M, NaClO(4)) at 80 degrees C: alpha-D, 1.128 +/- 0.004, 1.098 +/- 0.005; beta-D, 1.088 +/- 0.008, 1.042 +/- 0.004; gamma-D(2), (C5) 0.986 +/- 0.001, 0.967 +/- 0.003; leaving-group (18)O, 1.023 +/- 0.002, 1.023 +/- 0.003; ring (18)O, 0.983 +/- 0.001, 0.978 +/- 0.001; anomeric (13)C, 1.006 +/- 0.001, 1.006 +/- 0.003; and solvent, 0.434 +/- 0.017, 0.446 +/- 0.012. In conjunction with the reported (J. Am. Chem. Soc. 1986, 108, 7287-7294) KIEs for the acid-catalyzed hydrolysis of methyl alpha- and beta-glucopyranosides, it is possible to conclude that at the transition state for xylopyranoside hydrolysis resonance stabilization of the developing carbenium ion by the ring oxygen atom is coupled to exocyclic C-O bond cleavage, and the corresponding methyl glucopyranosides hydrolyze via transition states in which charge delocalization lags behind aglycon departure. In the analogous hydrolysis reactions of methyl 5-thioxylopyranosides, the measured KIEs in aqueous HClO(4) (mu = 1.0 M, NaClO(4)) at 80 degrees C for the alpha- and beta-anomers were, respectively, alpha-D, 1.142 +/- 0.010, 1.094 +/- 0.002; beta-D 1.061 +/- 0.003, 1.018(5) +/- 0.001; gamma-D(2), (C5) 0.999 +/- 0.001, 0.986 +/- 0.002; leaving-group (18)O, 1.027 +/- 0.001, 1.035 +/- 0.001; anomeric (13)C, 1.031 +/- 0.002, 1.028 +/- 0.002; solvent, 0.423 +/- 0.015, 0.380 +/- 0.014. The acid-catalyzed hydrolyses of methyl 5-thio-alpha- and beta-xylopyranosides, which occur faster than methyl alpha- and beta-xylopyranosides by factors of 13.6 and 18.5, respectively, proceed via reversibly formed O-protonated conjugate acids that undergo slow, rate-determining exocyclic C-O bond cleavage. These hydrolysis reactions do not have a nucleophilic solvent component as a feature of the thiacarbenium ion-like transition states.