When determining crystal structures of organic molecular materials from high-resolution powder diffraction data, the key step is the generation of reliable trial structures fur final refinement. The subject of the study reported here is the pharmaceutical material anhydrous theophylline (3,7-dihydro-1,3-dimethyl- 1H-purine-2,6-dione), which contains both oxygen and nitrogen as possible hydrogen bond acceptor atoms. A systematic search of direct space was employed to assess every possible packing arrangement of the asymmetric unit within the experimentally determined unit cell. Trial structures were ranked in terms of calculated lattice energy and weighted residuals from a comparison of calculated and experimental X-ray diffraction profiles. The systematic search found two packing arrangements with different intermolecular hydrogen-bonding motifs within the same unit cell. In one, denoted NH. . . N, the amino hydrogen is hydrogen bonded to the aldimine nitrogen, and in the other, denoted (NHO)-O-. . ., to the carbonyl oxygen neighboring the imidazole ring. These trial structures were "virtually indistinguishable" in terms of calculated lattice energy or X-ray profile fit. Solid-state NMR spectra of a commercial sample not only confirmed immediately that there was only one molecule in the crystallographic asymmetric unit but also produced distinctive C-13 and N-15 chemical shifts. The experimentally determined N-15 chemical shifts showed considerably better agreement with values from ab initio calculations for the trial crystal structure with N--H N hydrogen bonding. In these calculations, representative chains of three hydrogen-bonded molecules were employed as models for the (NHN)-N-. . . and (NHO)-O-. . . trial crystal structures. In addition, a more sophisticated analysis of the lattice energy hypersurfaccs. using a distributed multipole based intermolecular potential, indicated that the N-(HN)-N-. . . trial structure is the more stable. It was noted that the NH N packing motif identified by our studies is observed in a single-crystal determination for theophylline reported independently while our investigations were ongoing. Our study shows how the potential for polymorphism in a "given unit cell'' may be assessed successfully by combining several complementary experimental and theoretical approaches.
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An overview of recent work directed to the crystallographic structure solution of organic solids using a combination of X-ray powder diffraction and a grid-based direct space search for trial structures is presented. A number of study cases illustrate the application and potential of this approach. Additionally, the inherent limitations of powder diffraction as an isolated tool for structure determination are discussed together with an outline of ways to address these limitations in the future.
The materials phenazine and perylene have been previously reported to exhibit polymorphic behavior. Experimental evidence suggests that both molecules can exist in at least two polymorphic forms. In the case of phenazine. only one polymorph has a fully described crystal structure. In the case of perylene, two polymorphs have a reported structure, from single-crystal studies; however, one structure solution is of poor quality. This paper reports the results of a molecular modeling study and postulates crystal structures for the two polymorphs which lack a reliable experimental determination. Systematic searches of potential packing arrangements were conducted in the reported cells for both the solved and unsolved polymorphs of phenazine and perylene. A recently validated search method (Hammond, R. B.; Roberts, K. J.; Docherty, R.; Edmondson, M. J. Phys. Chem. B 1997, 101, 6532) was employed to rank packing arrangements by considering nonbonded atom-atom distances in combination with calculated lattice energies. The molecular packing arrangements were compared and contrasted using the packing energy breakdown routines within the program HABIT95 (Clydesdale, G.; Roberts, K. J.; Docherty, R. Quantum Chemistry Program Exchange 1996, 16, 1).