Increasing atmospheric concentrations of methane have led scientists to examine its sources of origin. Ruminant livestock can produce 250 to 500 L of methane per day. This level of production results in estimates of the contribution by cattle to global warming that may occur in the next 50 to 100 yr to be a little less than 2%. Many factors influence methane emissions from cattle and include the following: level of feed intake, type of carbohydrate in the diet, feed processing, addition of lipids or ionophores t o the diet, and alterations in the ruminal microflora. Manipulation of these factors can reduce methane emissions from cattle. Many techniques exist to quantify methane emissions from individual or groups of animals. Enclosure techniques are precise but require trained animals and may limit animal movement. Isotopic and nonisotopic tracer techniques may also be used effectively. Prediction equations based on fermentation balance or feed characteristics have been used to estimate methane production. These equations are useful, but the assumptions and conditions that must be met for each equation limit their ability to accurately predict methane production. Methane production from groups of animals can be measured by mass balance, micrometeorological, or tracer methods. These techniques can measure methane emissions from animals in either indoor or outdoor enclosures. Use of these techniques and knowledge of the factors that impact methane production can result in the development of mitigation strategies to reduce methane losses by cattle. Implementation of these strategies should result in enhanced animal productivity and decreased contributions by cattle to the atmospheric methane budget.

Recurrent deposition of organic-rich sediment layers (sapropels) in the eastern Mediterranean Sea is caused by complex interactions between climatic and biogeochemical processes. Disentangling these influences is therefore important for Mediterranean palaeo-studies in particular, and for understanding ocean feedback processes in general. Crucially, sapropels are diagnostic of anoxic deep-water phases, which have been attributed to deep-water stagnation, enhanced biological production or both. Here we use an ocean-biogeochemical model to test the effects of commonly proposed climatic and biogeochemical causes for sapropel S1. Our results indicate that deep-water anoxia requires a long prelude of deep-water stagnation, with no particularly strong eutrophication. The model-derived time frame agrees with foraminiferal δ 13 C records that imply cessation of deep-water renewal from at least Heinrich event 1 to the early Holocene. The simulated low particulate organic carbon burial flux agrees with pre-sapropel reconstructions. Our results offer a mechanistic explanation of glacial–interglacial influence on sapropel formation.

To understand the processes leading to the formation of Holocene sapropel S1 in the Eastern Mediterranean Sea, we integrated results from regional ocean-biogeochemical general circulation model experiments with biogeochemical and micropaleontological proxy records. Sapropel S1 formed during the Holocene insolation maximum, when strong Aegean north winds (Etesian) caused enhanced downwelling and mixing of warm surface waters in the Cretan and western Levantine seas accounting for the complex sea-surface temperature pattern derived from planktonic foraminiferal transfer functions. Our results support a scenario where sufficient organic matter for sapropel formation is buried under oligotrophic conditions in an anoxic water column refuting the “high-productivity” hypothesis. We reconstructed a synchronous shift in the state of deep-sea benthic ecosystems, documenting a rapid expansion of dysoxic to anoxic conditions with onset of S1 deposition. The recovery of benthic ecosystems during the terminal S1 phase was controlled by increasingly deeper convection and re-ventilation over a period of approximately 1,500 years.

Production pathways of the prominent volatile organic halogen compound methyl iodide (CH3I) are not fully understood. Based on observations, production of CH3I via photochemical degradation of organic material or via phytoplankton production has been proposed. Additional insights could not be gained from correlations between observed biological and environmental variables or from biogeochemical modeling to identify unambiguously the source of methyl iodide. In this study, we aim to address this question of source mechanisms with a three-dimensional global ocean general circulation model including biogeochemistry (MPIOM-HAMOCC (MPIOM - Max Planck Institute Ocean Model HAMOCC - HAMburg Ocean Carbon Cycle model)) by carrying out a series of sensitivity experiments. The simulated fields are compared with a newly available global data set. Simulated distribution patterns and emissions of CH3I differ largely for the two different production pathways. The evaluation of our model results with observations shows that, on the global scale, observed surface concentrations of CH3I can be best explained by the photochemical production pathway. Our results further emphasize that correlations between CH3I and abiotic or biotic factors do not necessarily provide meaningful insights concerning the source of origin. Overall, we find a net global annual CH3I air-sea flux that ranges between 70 and 260 Gg yr(-1). On the global scale, the ocean acts as a net source of methyl iodide for the atmosphere, though in some regions in boreal winter, fluxes are of the opposite direction (from the atmosphere to the ocean).

Using computer simulations, this study quantifies the potential effect of ocean acidification on marine biogenic sulphur emissions and the resulting feedback mechanisms on future climate. It emphasizes that a reduction of anthropogenic carbon dioxide emissions is not only necessary to limit the negative effects of ocean acidification on marine life, but also to avoid amplified climate warming due to changes in biogenic sulphur production.

Shelves have been estimated to account for more than one-fifth of the global marine primary production. It has been also conjectured that shelves strongly influence the oceanic absorption of anthropogenic CO2 (carbon shelf pump). Owing to their coarse resolution, currently applied global climate models are inappropriate to investigate the impact of climate change on shelves and regional models do not account for the complex interaction with the adjacent open ocean. In this study, a global ocean general circulation model and biogeochemistry model were set up with a distorted grid providing a maximal resolution for the NW European shelf and the adjacent northeast Atlantic. Using model climate projections we found that already a~moderate warming of about 2.0 K of the sea surface is linked with a reduction by ~ 30% of the biological production on the NW European shelf. If we consider the decline of anthropogenic riverine eutrophication since the 1990s, the reduction of biological production amounts is even larger. The relative decline of NW European shelf productivity is twice as strong as the decline in the open ocean (~ 15%). The underlying mechanism is a spatially well confined stratification feedback along the continental shelf break. This feedback reduces the nutrient supply from the deep Atlantic to about 50%. In turn, the reduced productivity draws down CO2 absorption in the North Sea by ~ 34% at the end of the 21st century compared to the end of the 20th century implying a strong weakening of shelf carbon pumping. Sensitivity experiments with diagnostic tracers indicate that not more than 20% of the carbon absorbed in the North Sea contributes to the long-term carbon uptake of the world ocean. The rest remains within the ocean's mixed layer where it is exposed to the atmosphere. The predicted decline in biological productivity, and decrease of phytoplankton concentration (in the North Sea by averaged 25%) due to reduced nutrient imports from the deeper Atlantic will probably affect the local fish stock negatively and therefore fisheries in the North Sea.

Ocean biogeochemistry is a novel standard component of fifth phase of the Coupled Model Intercomparison Project (CMIP5) experiments which project future climate change caused by anthropogenic emissions of greenhouse gases. Of particular interest here is the evolution of the oceanic sink of carbon and the oceanic contribution to the climate‐carbon cycle feedback loop. The Hamburg ocean carbon cycle model (HAMOCC), a component of the Max Planck Institute for Meteorology Earth system model (MPI‐ESM), is employed to address these challenges. In this paper we describe the version of HAMOCC used in the CMIP5 experiments (HAMOCC 5.2) and its implementation in the MPI‐ESM to provide a documentation and basis for future CMIP5‐related studies. Modeled present day distributions of biogeochemical variables calculated in two different horizontal resolutions compare fairly well with observations. Statistical metrics indicate that the model performs better at the ocean surface and worse in the ocean interior. There is a tendency for improvements in the higher resolution model configuration in representing deeper ocean variables; however, there is little to no improvement at the ocean surface. An experiment with interactive carbon cycle driven by emissions of CO2 produces a 25% higher variability in the oceanic carbon uptake over the historical period than the same model forced by prescribed atmospheric CO2 concentrations. Furthermore, a climate warming of 3.5 K projected at atmospheric CO2 concentration of four times the preindustrial value, reduced the atmosphere‐ocean CO2 flux by 1 GtC yr−1. Overall, the model shows consistent results in different configurations, being suitable for the type of simulations required within the CMIP5 experimental design.

This paper presents an estimate of the oceanic Lorenz energy cycle derived from a 1/10 degrees simulation forced by 6-hourly fluxes obtained from NCEP-NCAR reanalysis-1. The total rate of energy generation amounts to 6.6 TW, of which 1.9 TW is generated by the time-mean winds and 2.2 TW by the time-varying winds. The dissipation of kinetic energy amounts to 4.4 TW, of which 3 TWoriginate from the dissipation of eddy kinetic energy. The energy exchange between reservoirs is dominated by the baroclinic pathway and the pathway that distributes the energy generated by the time-mean winds. The former converts 0.7 to 0.8 TW mean available potential energy to eddy available potential energy and finally to eddy kinetic energy, whereas the latter converts 0.5 TW mean kinetic energy to mean available potential energy.This energy cycle differs from the atmospheric one in two aspects. First, the generation of the mean kinetic and mean available potential energy is each, to a first approximation, balanced by the dissipation. The interaction of the oceanic general circulation with mesoscale eddies is hence less crucial than the corresponding interaction in the atmosphere. Second, the baroclinic pathway in the ocean is facilitated not only by the surface buoyancy flux but also by the winds through a conversion of 0.5 TW mean kinetic energy to mean available potential energy. In the atmosphere, the respective conversion is almost absent and the baroclinic energy pathway is driven solely by the differential heating.

Abstract. Continental shelf seas are known to support a large fraction of the global primary production. Yet, they are mostly ignored or neglected in global biogeochemical models. A number of processes that control the transfer of dissolved nutrients from rivers to the open ocean remain poorly understood. This applies in particular to dissolved silica which drives the growth of diatoms that form a large part of the phytoplankton biomass and are thus an important contributor to export production of carbon. Here, the representation of the biogeochemical cycling along continents is improved by coupling a high resolution database of riverine fluxes of nutrients to the global biogeochemical ocean general circulation model HAMOCC5-OM. Focusing on silicon (Si), but including the whole suite of nutrients – carbon (C), nitrogen (N) and phosphorus (P) in various forms – inputs are implemented in the model at coastal coupling points using the COSCAT global database of 156 mega-river-ensemble catchments from Meybeck et al. (2006). The catchments connect to the ocean through coastal segments according to three sets of criteria: natural limits, continental shelf topography, and geophysical dynamics. According to the model the largest effects on nutrient concentrations occur in hot spots such as the Amazon plume, the Arctic – with high nutrient inputs in relation to its total volume, and areas that encounter the largest increase in human activity, e.g., Southern Asia.

F. Adloff, U. Mikolajewicz, M. Kucera, R. Grimm, E. Maier-Reimer, G. Schmiedl, and K. Emeis Max Planck Institute for Meteorology, Hamburg, Germany International Max Planck Research School on Earth System Modelling, Hamburg, Germany Univ Tübingen, Department of Geosciences, Tübingen, Germany Department of Geosciences, University of Hamburg, Hamburg, Germany Univ Hamburg, Inst Biogeochem and Marine Chem, Hamburg, Germany

Abstract. Nine thousand years ago (9 ka BP), the Northern Hemisphere experienced enhanced seasonality caused by an orbital configuration close to the minimum of the precession index. To assess the impact of this "Holocene Insolation Maximum" (HIM) on the Mediterranean Sea, we use a regional ocean general circulation model forced by atmospheric input derived from global simulations. A stronger seasonal cycle is simulated by the model, which shows a relatively homogeneous winter cooling and a summer warming with well-defined spatial patterns, in particular, a subsurface warming in the Cretan and western Levantine areas. The comparison between the SST simulated for the HIM and a reconstruction from planktonic foraminifera transfer functions shows a poor agreement, especially for summer, when the vertical temperature gradient is strong. As a novel approach, we propose a reinterpretation of the reconstruction, to consider the conditions throughout the upper water column rather than at a single depth. We claim that such a depth-integrated approach is more adequate for surface temperature comparison purposes in a situation where the upper ocean structure in the past was different from the present-day. In this case, the depth-integrated interpretation of the proxy data strongly improves the agreement between modelled and reconstructed temperature signal with the subsurface summer warming being recorded by both model and proxies, with a small shift to the south in the model results. The mechanisms responsible for the peculiar subsurface pattern are found to be a combination of enhanced downwelling and wind mixing due to strengthened Etesian winds, and enhanced thermal forcing due to the stronger summer insolation in the Northern Hemisphere. Together, these processes induce a stronger heat transfer from the surface to the subsurface during late summer in the western Levantine; this leads to an enhanced heat piracy in this region, a process never identified before, but potentially characteristic of time slices with enhanced insolation.

Nine thousand years ago (9 ka BP), the Northern Hemisphere experienced enhanced seasonality caused by an orbital configuration close to the minimum of the precession index. To assess the impact of this "Holocene Insolation Maximum" (HIM) on the Mediterranean Sea, we use a regional ocean general circulation model forced by atmospheric input derived from global simulations. A stronger seasonal cycle is simulated by the model, which shows a relatively homogeneous winter cooling and a summer warming with well-defined spatial patterns, in particular, a subsurface warming in the Cretan and western Levantine areas.The comparison between the SST simulated for the HIM and a reconstruction from planktonic foraminifera transfer functions shows a poor agreement, especially for summer, when the vertical temperature gradient is strong. As a novel approach, we propose a reinterpretation of the reconstruction, to consider the conditions throughout the upper water column rather than at a single depth. We claim that such a depth-integrated approach is more adequate for surface temperature comparison purposes in a situation where the upper ocean structure in the past was different from the present-day. In this case, the depth-integrated interpretation of the proxy data strongly improves the agreement between modelled and reconstructed temperature signal with the subsurface summer warming being recorded by both model and proxies, with a small shift to the south in the model results.The mechanisms responsible for the peculiar subsurface pattern are found to be a combination of enhanced down-welling and wind mixing due to strengthened Etesian winds, and enhanced thermal forcing due to the stronger summer insolation in the Northern Hemisphere. Together, these processes induce a stronger heat transfer from the surface to the subsurface during late summer in the western Levantine; this leads to an enhanced heat piracy in this region, a process never identified before, but potentially characteristic of time slices with enhanced insolation.