Taxonomic confusion and limited data have impeded species-level biogeographic analyses of the world’s largest bony fishes, ocean sunfishes (Molidae; ‘molids’), in many ecosystems. However, recent advances in molid taxonomy and the emergence of photo-based community-science platforms provide an opportunity to revisit species-level biogeography. In this study, we use crowd-sourced images of 1,213 ocean sunfishes to determine if molid morphology visible in citizen-science images permits reliable species determination. From the ensuing data, we describe patterns in molid size structure and species composition from 1,178 molids observed in the Alaska and California Current Systems (ACS and CCS, respectively). Molids <1 m total length (TL) were commonly reported in the CCS, particularly off the central coast of California, suggesting this area may function as a molid nursery. Molids >1 m TL were more commonly observed in both the CCS and cooler ACS, which suggests larger molids occupy a larger thermal range (ontogenetic habitat expansion) than smaller individuals. Overall, Mola mola was the most frequently observed species in both the ACS and CCS; however, the persistent occurrence of Mola tecta in both current systems suggests a range extension for this otherwise Southern Hemisphere species. The species identity of six M. tecta specimens from California and Alaska were verified with genetic analysis. Finally, two Mola alexandrini confirmed in the southern portion of the CCS represent the first records of this species in the Northeast Pacific Ocean.

Bathydraconidae (Notothenioidei) are a group of benthic fishes endemic to the Southern Ocean. Because of their recent evolutionary radiation and limited sampling efforts due to their occurrence in remote regions, their diversity is likely underestimated. Akarotaxis nudiceps, currently the only recognized member of its genus, is an especially poorly known bathydraconid. Although A. nudiceps has a circumpolar distribution on the Antarctic continental shelf, its deep habitat and rarity limit knowledge of its life history and biology. Using a combination of morphological and genetic analyses, we identified an undescribed species of this genus, herein named Akarotaxis gouldae sp. nov. (Banded Dragonfish). The separation of this species was initially identified from archived larval specimens, highlighting the importance of early life stage taxonomy and natural history collections. All currently known adult and larval A. gouldae sp. nov. specimens have been collected from a restricted ~400 km coastal section of the western Antarctic Peninsula, although this is possibly due to sampling bias. This region is targeted by the epipelagic Antarctic krill fishery, which could potentially capture larval fishes as bycatch. Due to the extremely low fecundity of A. gouldae sp. nov. and near-surface occurrence of larvae, we suggest the growing Antarctic krill fishery could negatively impact this speces.

Variability of water conditions in coastal environments could affect oyster aquaculture production through three main environmental-tolerance mechanisms: phenotypic plasticity, within-generation carryover effects, and selective mortality. Aquaculture production of eastern oyster, Crassostrea virginica, larvae occurs on weekly timescales in Virginia, with variations in salinity experienced by subsequent larval cohorts. The present study examined the relative importance of within-generation carryover effects - phenotypic changes during a previous life stage that impact a later stage - and phenotypic plasticity in shaping the performance of juvenile oysters after an experience of small differences in salinity (< 2 salinity units) during the larval stage. Genetic diversity was also assessed to rule out large shifts in allele frequencies, or loss of diversity, that would suggest observed effects were the result of selective mortality rather than carryover effects or phenotypic plasticity. Larval oysters were reared through settlement and metamorphosis under two salinities (thirteen and fifteen) that represent small differences between consecutive spawns in a hatchery. Juveniles were then raised in situ in two Virginia tributaries of the lower Chesapeake Bay, the York and Rappahannock rivers. Oyster production occurs within these two tributaries under distinct salinity conditions, with the Rappahannock tending to be of lower salinity. Metrics of survival, growth, oxidative stress, and condition index were compared to assess phenotypic plasticity and within-generation carryover effects. Juvenile oyster survival and physiology correlated with in situ environmental conditions rather than previous larval salinity experience. Specifically, juvenile oysters raised in the Rappahannock River had greater survival (13%), shell length (14%), condition index (38%), and dry tissue weight (78%) than those raised in the York River, regardless of larval salinity. Rappahannock River oysters also had 20% lower total antioxidant capacity than York River oysters. Genetic diversity remained high with no large shifts in allelic frequencies that would suggest non-random loss of alleles attributable to selection. Our results suggest that small salinity differences experienced in shellfish hatcheries 48 h after fertilization likely do not impact juvenile oyster performance during grow-out; rather, phenotypic plasticity likely underpins juvenile oyster performance during the transition from hatchery to farms. The importance of phenotypic plasticity presents another reason why farm site selection is critical to the performance and success of aquaculture product. Future studies are needed to further identify whether larval responses to salinity conditions are dependent on additional environmentally relevant conditions like temperature or the timing of exposure post-fertilization to better understand the relative importance of phenotypic plasticity, within-generation carryover effects, and selective mortality within oyster aquaculture.

Gymnurid rays are found in tropical, subtropical, and temperate regions around the world, where they are associated with sandy or muddy bottoms in coastal areas, being easily distinguished from other rays by the width of the disc. In recent years, the systematics of this family have been revised extensively. However, there has been no comprehensive molecular review of the family based on an adequate sample of species and localities, which may have obscured the presence of distinct evolutionary lineages. The present study was based on samples of 12 of the 13 valid species of the genus Gymnura , which were used for a multilocus reconstruction of the evolutionary history of the family Gymnuridae. Our results indicate the existence of several cryptic gymnurid lineages, within the species Gymnura micrura , Gymnura lessae , Gymnura altavela , and Gymnura poecilura . Also, we indicate that only half of the species that compose the genus are known, as well their conservation status. The analyses also indicate that the gymnurids originated during the Paleocene, with events of dispersal and vicariance occurring through the formation of oceanographic barriers, and species diversification peaking during the Oligocene and Miocene. The results of the present study reinforce the need for a comprehensive revision of the systematics of the family, in particular, the widely distributed species that are considered valid taxa, but may, in fact, represent different cryptic species. The inadequate classification of this cryptic diversity may have negative implications for the development of effective conservation measures.

Abstract Aquaculture is growing rapidly worldwide, and sustainability is dependent on an understanding of current genetic variation and levels of connectivity among populations. Genetic data are essential to mitigate the genetic and ecological impacts of aquaculture on wild populations and guard against unintended human‐induced loss of intraspecific diversity in aquacultured lines. Impacts of disregarding genetics can include loss of diversity within and between populations and disruption of local adaptation patterns, which can lead to a decrease in fitness. The northern hard clam, Mercenaria mercenaria (Linnaeus, 1758), is an economically valuable aquaculture species along the North American Atlantic and Gulf coasts. Hard clams have a pelagic larval phase that allows for dispersal, but the level of genetic connectivity among geographic areas is not well understood. To better inform the establishment of site‐appropriate aquaculture brood stocks, this study used DArTseq™ genotyping by sequencing to characterize the genetic stock structure of wild clams sampled along the east coast of North America and document genetic diversity within populations. Samples were collected from 15 locations from Prince Edward Island, Canada, to South Carolina, USA. Stringent data filtering resulted in 4960 single nucleotide polymorphisms from 448 individuals. Five genetic breaks separating six genetically distinct populations were identified: Canada, Maine, Massachusetts, Mid‐Atlantic, Chesapeake Bay, and the Carolinas (FST 0.003–0.046; p < 0.0001). This is the first study to assess population genetic structure of this economically important hard clam along a large portion of its native range with high‐resolution genomic markers, enabling identification of previously unrecognized population structure. Results of this study not only broaden insight into the factors shaping the current distribution of M. mercenaria but also reveal the genetic population dynamics of a species with a long pelagic larval dispersal period along the North American Atlantic and Gulf coasts.

The notothenioid family Bathydraconidae is a poorly understood family of fishes endemic to the Southern Ocean. There is especially little information on Akarotaxis nudiceps, one of the deepest-dwelling and least fecund bathydraconid species. Using genetic and morphological data, we document and describe the larval stages of this unique species, offer a novel characteristic to distinguish it from the morphologically similar bathydraconid Prionodraco evansii and use the sampling locations to infer a possible spawning area of A. nudiceps along the western Antarctic Peninsula. These results provide important baseline information for locating, identifying and studying the biology of A. nudiceps, an important component of the Southern Ocean ecosystem.

Globally, tunas are among the most valuable fish stocks, but are also inherently difficult to monitor and assess. Samples of larvae of Western Atlantic bluefin tuna Thunnus thynnus (Linnaeus, 1758) from standardized annual surveys in the northern Gulf of Mexico provide a potential source of "offspring" for close-kin mark-recapture (CKMR) estimates of abundance. However, the spatial patchiness and highly skewed numbers of larvae per tow suggest sampled larvae may come from a small number of parents, compromising the precision of CKMR. We used high throughput genomic profiling to study sibship within and among larval tows from the 2016 standardized Gulf-wide survey compared to targeted sampling carried out in 2017. Full- and half-siblings were found within both years, with 12% of 156 samples in 2016 and 56% of 317 samples in 2017 having at least one sibling. There were also two pairs of cross cohort half-siblings. Targeted sampling increased the number of larvae collected per sampling event but resulted in a higher proportion of siblings. The combined effective sample size across both years was about 75% of the nominal size, indicating that Gulf of Mexico larval collections could be a suitable source of juveniles for CKMR in Western Atlantic bluefin tuna.

Globally, commercial fisheries for whelk (family Buccinidae) generally exhibit a boom-and-bust cycle that fuels overexploitation of resources. Channeled whelk Busycotypus canaliculatus is a commercially important species that supports a valuable fishery along the Atlantic coast of the United States. The fishery is managed at the state level, with minimum landing size varying by state. Biological studies of channeled whelk in New England and the mid-Atlantic region have indicated that females have a low probability of maturity upon entering their respective fisheries. The life history characteristics of channeled whelk, including slow growth, late maturation, and direct development paired with unsuitable minimum landing size, make this species vulnerable to overexploitation. Currently, the population genetic structure of channeled whelk is unknown, impeding the ability to appropriately inform management. This study used 2,570 single nucleotide polymorphisms to elucidate the population genetic structure of channeled whelk sampled from 10 locations ranging from Massachusetts to South Carolina. The data indicated seven genetically distinct populations across the sampled region of the U.S. Atlantic coast. Estimates of genetic divergence among populations spanned an order of magnitude (F-ST = 0.017-0.582), with higher levels of divergence observed when comparing populations separated by biogeographic barriers. Based on the magnitude of observed genetic differences, five regional management units are suggested. The results of this study will aid discussions among fisheries managers in Atlantic states aimed at the development of appropriate management plans. The complex population genetic structure revealed by this study underscores the need for more comprehensive sampling, including between fishing locations sampled in this study and among offshore locations, to better understand the population genetic structure of channeled whelk.

Impacts of urban development on aquatic populations are often complex and difficult to ascertain, but population genetic analysis has allowed researchers to monitor and estimate gene flow in the context of existing and future hydroelectric projects. The Lower Mekong Basin is undergoing rapid hydroelectric development with around 50 completed and under-construction dams and 95 planned dams. The authors investigated the baseline genetic diversity of two exploited migratory fishes, the mud carpHenicorhynchus lobatus(five locations), and the rat-faced pangasiid catfish,Helicophagus leptorhynchus(two locations), in the Lower Mekong Basin using the genomic double digest restriction site-associated DNA (ddRAD) sequencing method. In both species, fish sampled upstream of Khone Falls were differentiated from those collected at other sites, andN(e)estimates at the site above the falls were lower than those at other sites. This was the first study to utilize thousands of RAD-generated single nucleotide polymorphisms to indicate that the Mekong's Khone Falls are a potential barrier to gene flow for these two moderately migratory species. The recent completion of the Don Sahong dam across one of the only channels for migratory fishes through Khone Falls may further exacerbate signatures of isolation and continue to disrupt the migration patterns of regionally vital food fishes. In addition,H. lobatuspopulations downstream of Khone Falls, including the 3S Basin and Tonle Sap system, displayed robust connectivity. Potential obstruction of migration pathways between these river systems resulting from future dam construction may limit dispersal, which has led to elevated inbreeding rates and even local extirpation in other fragmented riverine species.

An understanding of the genetic composition of populations across management boundaries is vital to developing successful strategies for sustaining biodiversity and food resources. This is especially important in ecosystems where habitat fragmentation has altered baseline patterns of gene flow, dividing natural populations into smaller subpopulations and increasing potential loss of genetic variation through genetic drift. River systems can be highly fragmented by dams built for flow regulation and hydropower. We used reduced-representation sequencing to examine genomic patterns in an exploited catfish, Hemibagrus spilopterus, in a hotspot of biodiversity and hydropower development-the Mekong River basin. Our results revealed the presence of 2 highly divergent coexisting genetic lineages which may be cryptic species. Within the lineage with the greatest sample sizes, pairwise F-ST values, principal component analysis, and a STRUCTURE analysis all suggest that long-distance migration is not common across the Lower Mekong Basin, even in areas where flood-pulse hydrology has limited genetic divergence. In tributaries, effective population size estimates were at least an order of magnitude lower than in the Mekong mainstream indicating these populations may be more vulnerable to perturbations such as human-induced fragmentation. Fish isolated upstream of several dams in one tributary exhibited particularly low genetic diversity, high amounts of relatedness, and a level of inbreeding (G(IS) = 0.51) that has been associated with inbreeding depression in other outcrossing species. Our results highlight the importance of assessing genetic structure and diversity in riverine fisheries populations across proposed dam development sites for the preservation of these critically important resources.