Fine particulate matter (PM2.5) exposure worsens chronic respiratory diseases through oxidative stress and inflammation. Perilla frutescens (L.) has potential respiratory protective properties, but the impact of growth stages on its beneficial metabolites is unclear. We aimed to evaluate how different growth stages affect phenolic acids, flavonoids, and polycosanols in perilla seeds and flowers and their efficacy in countering PM2.5-induced damage. Perilla seeds and flowers from five varieties at 10, 20, 30, and 40 days post-flowering were analyzed for metabolite content. Their antioxidant, anti-inflammatory, and respiratory protective effects were tested in RPMI 2650 cells. Our findings indicated that perilla flowers contained higher levels of functional components than seeds and exhibited significant variation with maturation. Phenolic acids of perilla flowers were highest at the early stages of maturation after flowering. However, individual flavones of perilla flowers were the highest at the late maturation stages after flowering. Extracts from perilla flowers harvested 20 days after flowering exhibited significant respiratory protection, effectively inhibiting inflammatory cytokines, mucus secretion, and oxidative stress markers. In conclusion, the flower parts of perilla, particularly those harvested 20 days after flowering, are useful materials for obtaining phenolic compounds, including rosmarinic acid, with high antioxidant and respiratory enhancement effects.

Eunyoung Oh, Sungup Kim, Jung In Kim, Min Young Kim, Sang Woo Kim, Jeongeun Lee, Eunsoo Lee, Chae-Yeon Han, Heungsu Lee, and Myoung-Hee Lee. Korean J. Breed. Sci. 2024;56:345-51. https://doi.org/10.9787/KJBS.2024.56.3.345

Major depressive disorder (MDD) is a common mental illness worldwide and is triggered by an intricate interplay between environmental and genetic factors. Although there are several studies on common variants in MDD, studies on rare variants are relatively limited. In addition, few studies have examined the genetic contributions to neurostructural alterations in MDD using whole-exome sequencing (WES). We performed WES in 367 patients with MDD and 161 healthy controls (HCs) to detect germline and copy number variations in the Korean population. Gene-based rare variants were analyzed to investigate the association between the genes and individuals, followed by neuroimaging-genetic analysis to explore the neural mechanisms underlying the genetic impact in 234 patients with MDD and 135 HCs using diffusion tensor imaging data. We identified 40 MDD-related genes and observed 95 recurrent regions of copy number variations. We also discovered a novel gene, FRMPD3 , carrying rare variants that influence MDD. In addition, the single nucleotide polymorphism rs771995197 in the MUC6 gene was significantly associated with the integrity of widespread white matter tracts. Moreover, we identified 918 rare exonic missense variants in genes associated with MDD susceptibility. We postulate that rare variants of FRMPD3 may contribute significantly to MDD, with a mild penetration effect.

Alzheimer's disease, a major cause of dementia, is characterized by impaired cholinergic function, increased oxidative stress, and amyloid cascade induction. Sesame lignans have attracted considerable attention owing to their beneficial effects on brain health. This study investigated the neuroprotective potential of lignan-rich sesame cultivars. Among the 10 sesame varieties studied, Milyang 74 (M74) extracts exhibited the highest total lignan content (17.71 mg/g) and in vitro acetylcholinesterase (AChE) inhibitory activity (66.17%, 0.4 mg/mL). M74 extracts were the most effective in improving cell viability and inhibiting reactive oxygen species (ROS) and malondialdehyde (MDA) generation in amyloid-β25-35 fragment-treated SH-SY5Y cells. Thus, M74 was used to evaluate the nootropic effects of sesame extracts and oil on scopolamine (2 mg/kg)-induced memory impairment in mice compared to the control cultivar (Goenback). Pretreatment with the M74 extract (250 and 500 mg/kg) and oil (1 and 2 mL/kg) effectively improved memory disorder in mice (demonstrated by the passive avoidance test), inhibited AChE, and enhanced acetylcholine (Ach) levels. Moreover, immunohistochemistry and Western blot results showed that the M74 extract and oil reversed the scopolamine-induced increase in APP, BACE-1, and presenilin expression levels in the amyloid cascade and decreased BDNF and NGF expression levels in neuronal regeneration.

Peanut (Arachis hypogaea L.) is a globally cultivated crop of significant economic and nutritional importance. The role of gibberellic-acid-stimulated Arabidopsis (GASA) family genes is well established in plant growth, development, and biotic and abiotic stress responses. However, there is a gap in understanding the function of GASA proteins in cultivated peanuts, particularly in response to abiotic stresses such as drought and salinity. Thus, we conducted comprehensive in silico analyses to identify and verify the existence of 40 GASA genes (termed AhGASA) in cultivated peanuts. Subsequently, we conducted biological experiments and performed expression analyses of selected AhGASA genes to elucidate their potential regulatory roles in response to drought and salinity. Phylogenetic analysis revealed that AhGASA genes could be categorized into four distinct subfamilies. Under normal growth conditions, selected AhGASA genes exhibited varying expressions in young peanut seedling leaves, stems, and roots tissues. Notably, our findings indicate that certain AhGASA genes were downregulated under drought stress but upregulated under salt stress. These results suggest that specific AhGASA genes are involved in the regulation of salt or drought stress. Further functional characterization of the upregulated genes under both drought and salt stress will be essential to confirm their regulatory roles in this context. Overall, our findings provide compelling evidence of the involvement of AhGASA genes in the mechanisms of stress tolerance in cultivated peanuts. This study enhances our understanding of the functions of AhGASA genes in response to abiotic stress and lays the groundwork for future investigations into the molecular characterization of AhGASA genes.

Molecular profiling of the hypothalamus in response to metabolic shifts is a critical cue to better understand the principle of the central control of whole-body energy metabolism. The transcriptional responses of the rodent hypothalamus to short-term calorie restriction have been documented. However, studies on the identification of hypothalamic secretory factors that potentially contribute to the control of appetite are lacking. In this study, we analyzed the differential expression of hypothalamic genes and compared the selected secretory factors from the fasted mice with those of fed control mice using bulk RNA-sequencing. We verified seven secretory genes that were significantly altered in the hypothalamus of fasted mice. In addition, we determined the response of secretory genes in cultured hypothalamic cells to treatment with ghrelin and leptin. The current study provides further insights into the neuronal response to food restriction at the molecular level and may be useful for understanding the hypothalamic control of appetite.

Sesame (Sesamum indicum L.), an oilseed crop, is gaining worldwide recognition for its healthy functional ingredients as consumption increases. The content of lignans, known for their antioxidant and anti-inflammatory effects, is a key agronomic trait that determines the industrialization of sesame. However, the study of the genetics and physiology of lignans in sesame is challenging, as they are influenced by multiple genes and environmental factors, therefore, the understanding of gene function and synthetic pathways related to lignan in sesame is still limited. To address these knowledge gaps, we conducted genetic analyses using F7 recombinant inbred line (RIL) populations derived from Goenbaek and Gomazou as low and high lignin content variants, respectively. Using the QTL-seq approach, we identified three loci, qLignan1-1, qLignan6-1, and qLignan11-1, that control lignan content, specifically sesamin and sesamolin. The allelic effect between loci was evaluated using the RIL population. qLignan6-1 had an additive effect that increased lignan content when combined with the other two loci, suggesting that it could be an important factor in gene pyramiding for the development of high-lignan varieties. This study not only highlights the value of sesame lignan, but also provides valuable insights for the development of high-lignan varieties through the use of DNA markers in breeding strategies. Overall, this research contributes to our understanding of the importance of sesame oil and facilitates progress in sesame breeding for improved lignan content.

Tae Joung Ha, Eom-ji Hwang, Eunyoung Oh, Myoung-Hee Lee, Seok-Bo Song, Jung-In Kim, and You-Jin Park. Journal of the Korean Society of Food Science and Nutrition 2023;52:821-9. https://doi.org/10.3746/jkfn.2023.52.8.821

Eunyoung Oh, Sungup Kim, Jung In Kim, Min-Young Kim, Jeongeun Lee, Sang-Woo Kim, Eunsoo Lee, Rizwana Syed Begum Nabi, Myoung Hee Lee, Kwang-Soo Cho. Plant Breed. Biotech. 2023;11:253-62. https://doi.org/10.9787/PBB.2023.11.4.253

Sung-Up Kim*, Jeongun Lee, Eunyoung Oh, Jung-In Kim, Min Young Kim, Sang Woo Kim, Kwang-Soo Cho, Myoung-Hee Lee, and Chan Sik Jung. Korean J. Breed. Sci. 2022;54:51-6. https://doi.org/10.9787/KJBS.2022.54.1.51

Min Young Kim, Sungup Kim, Jung In Kim, Eunyoung Oh, Sang Woo Kim, Jeongeun Lee, Eunsoo Lee, and Myoung Hee Lee. Journal of the Korean Society of Food Science and Nutrition 2022;51:660-70. https://doi.org/10.3746/jkfn.2022.51.7.660

Eunyoung Oh*, Sungup Kim, Jung In Kim, Min Young Kim, Sang Woo Kim, Jeongeun Lee, Eunsoo Lee, Kwang-Soo Cho, and Myoung-Hee Lee. Korean J. Breed. Sci. 2022;54:480-7. https://doi.org/10.9787/KJBS.2022.54.4.480

Phytophthora blight (PB) caused by Phytophthora nicotianae is a highly destructive disease in sesame ( Sesamum indicum L.). In this study, we used linkage mapping and genome-wide association study (GWAS) to identify quantitative trait loci (QTL) and candidate genes associated with PB resistance. The QTL mapping in 90 RILs of the Goenbaek × Osan cross using genotyping-by-sequencing detected significant QTLs for PB resistance on chromosome 10, explaining 12.79%–13.34% of phenotypic variation. Association of this locus to PB resistance was also revealed through bulked segregant analysis in second RIL population (Goenbaek × Milsung cross) comprising 188 RILs. The GWAS of 87 sesame accessions evaluated against three P. nicotianae isolates identified 29 SNPs on chromosome 10 significantly associated with PB resistance. These SNPs were located within a 0.79 Mb region, which co-located with the QTL intervals identified in RIL populations, and hence scanned for identifying candidate genes. This region contained several defense-related candidate R genes, five of which were selected for quantitative expression analysis. One of these genes, SIN_1019016 was found to show significantly higher expression in the resistant parent compared to that in the susceptible parents and selected RILs. Paired-end sequencing of the gene SIN_1019016 in parental cultivars revealed two synonymous SNPs between Goenbaek and Osan in exon 2 of coding DNA sequence. These results suggested SIN_1019016 as one of the candidate gene conferring PB resistance in sesame. The findings from this study will be useful in the marker-assisted selection as well as the functional analysis of PB resistance candidate gene(s) in sesame.

Cultivated peanut (Arachis hypogaea) is one of the important legume oilseed crops. Cultivated peanut has a narrow genetic base. Therefore, it is necessary to widen its genetic base and diversity for additional use. The objective of the present study was to assess the genetic diversity and population structure of 96 peanut genotypes with 9478 high-resolution SNPs identified from a 48 K 'Axiom_Arachis' SNP array. Korean set genotypes were also compared with a mini-core of US genotypes. These sets of genotypes were used for genetic diversity analysis. Model-based structure analysis at K = 2 indicated the presence of two subpopulations in both sets of genotypes. Phylogenetic and PCA analysis clustered these genotypes into two major groups. However, clear genotype distribution was not observed for categories of subspecies, botanical variety, or origin. The analysis also revealed that current Korean genetic resources lacked variability compared to US mini-core genotypes. These results suggest that Korean genetic resources need to be expanded by creating new allele combinations and widening the genetic pool to offer new genetic variations for Korean peanut improvement programs. High-quality SNP data generated in this study could be used for identifying varietal contaminant, QTL, and genes associated with desirable traits by performing mapping, genome-wide association studies.

Jae Eun Park, Jung In Kim, Myoung Hee Lee, Sungup Kim, Eunyoung Oh, Kwang Soo Cho, and Ki Won Oh. Journal of the Korean Society of Food Science and Nutrition 2021;50:149-54. https://doi.org/10.3746/jkfn.2021.50.2.149

‘Hae-Ol’ (Arachis hypogaea ssp. Hypogaea) -a high-oleate peanut variety-was developed at the Department of Southern Area Crop Science, National Institute of Crop Science in 2018. This variety was selected from the pedigree line crossed between short stem Virginia-type ‘HP825’ and high-oleate elite line ‘YG316’. The crude fat content of ‘Hae-Ol’ was 50.8%, and its oleic acid composition was 83.0% showing high-oleate property compared to that of ‘Daekwang’ variety (57.3%). The ratio of oleic acid to linoleic acid, which represents the oxidative stability, was 12 times higher in ‘Hae-Ol’ than in ‘Daekwang’. The increments in acid value and peroxide value were relatively slower in ‘Hae-Ol’, under the condition of accelerated oxidation. Over the three years of regional adaptation test (2016-2018) conducted at four regions, ‘Hae-Ol’ showed significantly higher grain yield (4.88 MT ⋅ ha -1 ), which was 16% more improved than that of ‘Daekwang’ (4.20 MT ⋅ ha -1 ). The seed of ‘Hae-Ol’ is brown in color and long-ellipse in shape and its 100-seed weight was 96 g. On field, ‘Hae-Ol’ demonstrated more resistance to late leaf spot ( Cercosporidium personatum ) and web blotch ( Phoma arachidicola ). It also had a shorter branch and main stem, which was related to the higher tolerance to lodging stress. The release of ‘Hae-Ol’ could contribute to the production of peanuts with enhanced quality and higher yield, and it is expected to be notably beneficial to both the producers and manufacturers (Registration No. 8407).

Perilla has a long history of cultivation and consumption in Korea. Its cultivar ‘Sodam’, which is used for its oil and powder, was developed from a cross between two parents ‘K015926’ and ‘Miryang27’. The parents were crossed in 2004, and their progenies were selected from F 3 to F 5 generations through pedigree method. Regional yield trials (RYTs) were conducted in four regions from 2012 to 2014. ‘Sodam’ is a light gray and small spherical-seeded cultivar. It matures earlier (October 2) than ‘Saeyeopsildeulkkae’, a standard cultivar, and the number of flower clusters per plant as well as the number of ears per cluster is higher in ‘Sodam’ than in the standard cultivar. Its seeds contain approximately 46.4% crude fat, and the oil is rich (about 65.0%) in alpha-linolenic acid, an omega-3 fatty acid. ‘Sodam’ is characterized by upright plant growth with narrow branch angles. The average yield of this cultivar was 1.23 ton/ha in adaptable regions. ‘Sodam’ is expected to be a potential cultivar source for production of good quality perilla oil (Registration No. 6729).