Although the Belousov-Zhabotinsky (BZ) chemical reaction has been the object of intense research efforts for almost a century, many aspects of the BZ complex oscillatory behavior still remain to be clarified, also due to difficulties in experimentally monitoring the speciation of the main brominated compounds during the reaction cycles. Herein, we describe an integrated approach based on Br K-edge X-ray absorption and ultraviolet-visible (UV-vis) spectroscopies to identify the onset and evolution of concentration-dependent collective bromine oscillations in the classical BZ reaction. Principal component analysis, multivariate curve resolution, and theoretical X-ray spectroscopy simulations were combined to identify the number, nature, and concentration time evolution of the key reaction brominated species during the chaotic and periodic BZ regimes. Our integrated approach enabled real-time monitoring of how variations in metal catalyst concentration influence both the metal center and key brominated BZ species throughout the different stages of the complex reaction pathway. The multidisciplinary experimental and theoretical approach, sensitive to both the brominated and metal portions of the BZ system, overcomes the challenges in detecting the spectroscopically silent BZ reaction species and may be applied to rationalize a wide range of BZ and non-BZ oscillatory reactions.
Metal-organic frameworks (MOFs) are receiving growing interest as transformative materials for real-world atmospheric water harvesting applications. However, obtaining molecular-level details on how surface effects regulate MOF water uptake has proven to be elusive. Here, we present a novel methodology based on ambient pressure soft X-ray absorption spectroscopy (AP-NEXAFS), machine learning-assisted theoretical spectroscopy and molecular dynamics simulations to gain selective insights into the behaviour of water at a MOF crystal surface. We applied our interdisciplinary method to investigate the structural and dynamical properties of water at the surface of the Mg-MOF-74 system, while obtaining complementary information on the water uptake and release from the bulk by synchrotron powder X-ray diffraction. Our investigation pointed out the simultaneous presence of Mg open sites and residual gas-phase water during dehydration, and proved that during water release a high number of surface Mg sites still interact with one or two water molecules. Conversely, when looking at the bulk, a significantly lower number of Mg sites have been found to interact with water molecules in the same experimental conditions. This behaviour suggests that the water adsorption (desorption) process starts from the interior of the material and propagates towards the channel openings. The combined approach based on AP-NEXAFS, PXRD experimental determinations and ML-supported theoretical analyses has been found to be a valuable tool to provide a thorough description of the water harvesting process at both surface and bulk of the crystal.
Metal-organic frameworks (MOFs) hold promise as designer materials for atmospheric water harvesting, due to their unrivaled porosity, chemical tunability, and water affinity. Although an accurate understanding of the pore filling sequence is critical to developing improved MOF water harvesters, obtaining molecular-level details of the evolution of water clusters in MOFs has proven to be experimentally challenging. Here, a novel approach based on X-ray absorption spectroscopy (XAS), X-ray pair distribution function, powder X-ray diffraction, molecular dynamics (MD) simulations and in-depth theoretical XAS calculations is presented to gain quantitative insights into the structural and dynamical properties of water adsorbed within MIL-100(Fe), a prototypical MOF with giant pores. The complementary synchrotron X-ray techniques shed light on the behavior of water confined in MIL-100(Fe) with unprecedented structural sensitivity at the short-, intermediate- and long-range length scales, while the MD and theoretical XAS simulations revealed the order according to which water molecules populate the MOF mesopores and tracked the evolution of the hydrogen-bond network topology as a function of water content. The developed method can provide often elusive information on how the local structure affects the behavior and performance of MOF water harvesters, which is key to the development of rationally optimized MOF systems.
The iron-catalyzed Belousov-Zhabotinsky (BZ) oscillating reaction was investigated in an unstirred reactor by combining Br K-edge X-ray absorption and UV-vis spectroscopies. The experimental data were analyzed through an integrated approach based on principal component analysis, multivariate curve resolution, and ab initio theoretical X-ray absorption spectroscopy (XAS), providing quantitative insights into the properties of the key reaction bromine species while contextually tracking the Fe2+ to Fe3+ oscillatory transformation. The high-quality XAS experimental data supported by the multivariate and theoretical analyses provide clear-cut evidence of the conversion of bromate, initially predominant in the reaction mixture, to the brominated derivative of the employed allylmalonic acid substrate. The described interdisciplinary method was proven to be valuable to monitor the fate of the main BZ reaction brominated species, which are silent to conventional spectroscopic methods of detection, and the developed approach may support future mechanistic investigations of other oscillatory systems.
A-site doped SrTiO3 is considered as a promising substitute for traditional anodic metals in solid oxide fuel cells (SOFCs). In this study, we present the reactivity of La0.2Sr0.25Ca0.45TiO3 (LCSTO), La0.2Sr0.7TiO3 (LSTO), and SrTiO3 (STO) toward H2 by operando ambient pressure NEXAFS spectroscopy and theoretical spectra simulation with FDMNES code. The samples were synthesized by MBE (molecular beam epitaxy), hydrothermal, and modified-Pechini routes. We found that the reducibility of the samples depends not only on their stoichiometry but also on the morphology, which is determined by the synthetic method. The results of these experiments give insight into the reducibility of Ti4+ in perovskites as well as the opportunity to further optimize the synthesis of these materials to obtain the best performance for SOFC applications.
Oscillating reactions are among the most intriguing phenomena in chemistry, but many questions on their mechanisms still remain unanswered, due to their intrinsic complexity and to the low sensitivity of the most common spectroscopic techniques toward the reaction brominated species. In this work, we investigate the cerium ion-catalyzed Belousov-Zhabotinsky (BZ) oscillating reaction by means of time-resolved X-ray absorption spectroscopy (XAS), in combination with UV-vis spectroscopy and unsupervised machine learning, multivariate curve resolution, and kinetic analyses. Altogether, we provide new insights into the collective oscillatory behavior of the key brominated species involved in the classical BZ reaction and measure previously unreported oscillations in their concentrations through Br K-edge XAS, while simultaneously tracking the oscillatory Ce4+-to-Ce3+ transformation by coupling XAS with UV-vis spectroscopy. Our work evidences the potential of the XAS technique to investigate the mechanisms of oscillatory chemical systems whose species are often not detectable with conventional experimental methods.
Metal–Organic Frameworks (MOFs) are nanostructured porous materials made up by metal cations and organic linkers forming three-dimensional structures. Since their discovery, the local properties of metal centers in MOFs have often been studied with hard X-ray absorption spectroscopy that is not a surface sensitive technique. Here, we employ the ambient-pressure soft X-ray absorption spectroscopy, using a newly developed experimental setup, to unveil the formation mechanism of surface defective sites in the prototypical Cu(II)-based MOF HKUST-1, as well as the reactivity and selectivity of these sites towards CO2 from the analysis of the Cu L3-edge near edge X-ray absorption spectroscopy (NEXAFS) data. We observe that, upon thermal heating, Cu(I) defects are formed more abundantly on the surface of the material as compared to the bulk, a process that is almost fully reversed when the MOF is exposed to CO2, even when mixed with H2. Additionally, we propose a structure and a formation mechanism for such defective sites, supported by theoretical DFT-based calculations.
The solvation of the Ag+ ion in the 1-butyl-3-methylimidazolium tetrafluoroborate ([C4mim][BF4]) ionic liquid (IL) has been studied by means of experimental and theoretical methods with the aim of elucidating the cation coordination structure and thermodynamic properties. Car-Parrinello molecular dynamics (CPMD) simulations showed that the Ag+ ion is coordinated by an average number of four [BF4]− anions in a pseudo-tetrahedral geometry. A high configurational disorder of the first solvation sphere is found, where the anions can be found both in mono- and bidentate coordination mode around the Ag+ ion. Also, a solvational equilibrium is observed as due to [BF4]− anion dissociation along the trajectory. The analysis of X-ray absorption spectroscopy data confirmed the picture provided by the CPMD simulation. Classical molecular dynamics simulations were carried out to obtain the single-ion solvation thermodynamic parameters. The negative water → IL free energy of transfer suggests that the Ag+ ion is more favorably solvated in the [C4mim][BF4] IL than in water. This behavior is due to a balance between the enthalpic and entropic contributions, which allows to find a rationale to the strong solvation capabilities of BF4-based ILs towards Ag+.
Magnesium chloride is a prototypical deliquescent material whose surface properties, although central for Ziegler-Natta cataysis, have so far remained elusive to experimental characterization. In this work, we use surface-selective X-ray absorption spectroscopy (XAS) at ambient pressure in combination with multivariate curve resolution, molecular dynamics, and XAS theoretical methods to track in real time and accurately describe the interaction between water vapor and the MgCl2 surface. By exposing MgCl2 to water vapor at temperatures between 595 and 391 K, we show that water is preferentially adsorbed on five-coordinated Mg2+ sites in an octahedral configuration, confirming previous theoretical predictions, and find that MgCl2 is capable of retaining a significant amount of adsorbed water even under prolonged heating to 595 K. As a consequence, our work provides first experimental insights into the unique surface affinity of MgCl2 for atmospheric water. The developed technique is proven highly sensitive to the modifications induced by adsorbates on a given low-Z metal based surface and may be useful in the toolbox required to disentangle the mechanisms of interfacial chemical processes.
Phosphorus K-edge X-ray absorption near-edge structure (XANES) spectroscopy is a technique routinely employed in the qualitative and quantitative analysis of phosphorus speciation in many scientific fields. The data analysis is, however, often performed in a qualitative manner, relying on linear combination fitting protocols or simple comparisons between the experimental data and the spectra of standards, and little quantitative structural and electronic information is thus retrieved. Herein, we report a thorough theoretical investigation of P K-edge XANES spectra of NaH2PO4·H2O, AlPO4, α-Ti(HPO4)2·H2O, and FePO4·2H2O showing excellent agreement with the experimental data. We find that different coordination shells of phosphorus, up to a distance of 5-6 Å from the photoabsorber, contribute to distinct features in the XANES spectra. This high structural sensitivity enables P K-edge XANES spectroscopy to even distinguish between nearly isostructural crystal phases of the same compound. Additionally, we provide a rationalization of the pre-edge transitions observed in the spectra of α-Ti(HPO4)2·H2O and FePO4·2H2O through density of states calculations. These pre-edge transitions are found to be enabled by the covalent mixing of phosphorus s and p orbitals and titanium or iron d orbitals, which happens even though neither metal ion is directly bound to phosphorus in the two systems.
Iron-based enzymes efficiently activate molecular oxygen to perform the oxidation of methane to methanol (MTM), a reaction central to the contemporary chemical industry. Conversely, a very limited number of artificial catalysts have been devised to mimic this process. Herein, we employ the MIL-100(Fe) metal-organic framework (MOF), a material that exhibits isolated Fe sites, to accomplish the MTM conversion using O2 as the oxidant under mild conditions. We apply a diverse set of advanced operando X-ray techniques to unveil how MIL-100(Fe) can act as a catalyst for direct MTM conversion. Single-phase crystallinity and stability of the MOF under reaction conditions (200 or 100 °C, CH4 + O2) are confirmed by X-ray diffraction measurements. X-ray absorption, emission, and resonant inelastic scattering measurements show that thermal treatment above 200 °C generates Fe(II) sites that interact with O2 and CH4 to produce methanol. Experimental evidence-driven density functional theory (DFT) calculations illustrate that the MTM reaction involves the oxidation of the Fe(II) sites to Fe(III) via a high-spin Fe(IV)═O intermediate. Catalyst deactivation is proposed to be caused by the escape of CH3• radicals from the relatively large MOF pore cages, ultimately resulting in the formation of hydroxylated triiron units, as proven by valence-to-core X-ray emission spectroscopy. The O2-based MTM catalytic activity of MIL-100(Fe) in the investigated conditions is demonstrated for two consecutive reaction cycles, proving the MOF potential toward active site regeneration. These findings will desirably lay the groundwork for the design of improved MOF catalysts for the MTM conversion.
Transition metal chemistry in solution is central to key processes in biology and catalysis. Achieving accurate knowledge on the structural and electronic properties of the relevant reaction intermediates requires the use of innovative and complementary spectroscopic probes. Herein, we combine X-ray Absorption Spectroscopy (XAS) and 1H-NMR to investigate the exchange reaction between two prototypical Cu coordination complexes in solution. By means of multivariate and theoretical analyses, we identify the number, nature and concentration time evolution of the relevant reaction intermediates and quantitatively determine their structures. The XAS and NMR techniques are proven to be complementary experimental tools to track the fate of both the metal and organic portions of reactive systems involving transition metals. The employed combined experimental and theoretical method may be useful in the study of reactive systems involving intermediates that may be labile or silent to conventional detection.
The direct oxidation of methane to methanol (MTM) is a significant challenge in catalysis and holds profound economic implications for the modern chemical industry. Bioinspired metal–organic frameworks (MOFs) with active iron and copper sites have emerged as innovative catalytic platforms capable of facilitating MTM conversion under mild conditions. This review discusses the current state of the art in applying MOFs with iron and copper catalytic centers to effectuate the MTM reaction, with a focus on the diverse spectroscopic techniques employed to uncover the electronic and structural properties of MOF catalysts at a microscopic level. We explore the synthetic strategies employed to incorporate iron and copper sites into various MOF topologies and explore the efficiency and selectivity of the MOFs embedded with iron and copper in acting as catalysts, as well as the ensuing MTM reaction mechanisms based on spectroscopic characterizations supported by theory. In particular, we show how integrating complementary spectroscopic tools that probe varying regions of the electromagnetic spectrum can be exceptionally conducive to achieving a comprehensive understanding of the crucial reaction pathways and intermediates. Finally, we provide a critical perspective on future directions to advance the use of MOFs to accomplish the MTM reaction.
Interfaces between water and materials are ubiquitous and are crucial in materials sciences and in biology, where investigating the interaction of water with the surface under ambient conditions is key to shedding light on the main processes occurring at the interface. Magnesium oxide is a popular model system to study the metal oxide-water interface, where, for sufficient water loadings, theoretical models have suggested that reconstructed surfaces involving hydrated Mg2+ metal ions may be energetically favored. In this work, by combining experimental and theoretical surface-selective ambient pressure X-ray absorption spectroscopy with multivariate curve resolution and molecular dynamics, we evidence in real time the occurrence of Mg2+ solvation at the interphase between MgO and solvating media such as water and methanol (MeOH). Further, we show that the Mg2+ surface ions undergo a reversible solvation process, we prove the dissolution/redeposition of the Mg2+ ions belonging to the MgO surface, and we demonstrate the formation of octahedral [Mg(H2O)6]2+ and [Mg(MeOH)6]2+ intermediate solvated species. The unique surface, electronic, and structural sensitivity of the developed technique may be beneficial to access often elusive properties of low-Z metal ion intermediates involved in interfacial processes of chemical and biological interest.
The dissipative translocation of the Zn2+ ion between two prototypical coordination complexes has been investigated by combining X-ray absorption and 1H NMR spectroscopy. An integrated experimental and theoretical approach, based on state-of-the-art Multivariate Curve Resolution and DFT based theoretical analyses, is presented as a means to understand the concentration time evolution of all relevant Zn and organic species in the investigated processes, and accurately characterize the solution structures of the key metal coordination complexes. Specifically, we investigate the dissipative translocation of the Zn2+ cation from hexaaza-18-crown-6 to two terpyridine moieties and back again to hexaaza-18-crown-6 using 2-cyano-2-phenylpropanoic acid and its para-chloro derivative as fuels. Our interdisciplinary approach has been proven to be a valuable tool to shed light on reactive systems containing metal ions that are silent to other spectroscopic methods. These combined experimental approaches will enable future applications to chemical and biological systems in a predictive manner.
The metal-based deep eutectic solvent (MDES) formed by NiCl2·6H2O and urea in 1:3.5 molar ratio has been prepared for the first time and characterized from a structural point of view. Particular accent has been put on the role of water in the MDES formation, since the eutectic could not be obtained with the anhydrous form of the metal salt. To this end, mixtures at different water/MDES molar ratios (W) have been studied with a combined approach exploiting molecular dynamics and ab initio simulations, UV-vis and near-infra-red spectroscopies, small- and wide-angle X-ray scattering, and X-ray absorption spectroscopy measurements. In the pure MDES, a close packing of Ni2+ ion clusters forming oligomeric agglomerates is present thanks to the mediation of bridging chloride anions and water molecules. Conversely, urea poorly coordinates the metal ion and is mostly found in the interstitial regions among the Ni2+ ion oligomers. This nanostructure is disrupted upon the introduction of additional water, which enlarges the Ni-Ni distances and dilutes the system up to an aqueous solution of the MDES constituents. In the NiCl2·6H2O 1:3.5 MDES, the Ni2+ ion is coordinated on average by one chloride anion and five water molecules, while water easily saturates the metal solvation sphere to provide a hexa-aquo coordination for increasing W values. This multidisciplinary study allowed us to reconstruct the structural arrangement of the MDES and its aqueous mixtures on both short- and intermediate-scale levels, clarifying the fundamental role of water in the eutectic formation and challenging the definition at the base of these complex systems.
X-ray absorption spectroscopy (XAS) has been employed to carry out structural characterization of the local environment around mercury after the dissolution of the HgCl2 molecule. A combined EXAFS (extended X-ray absorption fine structure) and XANES (X-ray absorption near edge structure) data analysis has been performed on the Hg L3-edge absorption spectra recorded on 0.1 M HgCl2 solutions in water, methanol (MeOH), acetone and acetonitrile. The Hg-Cl distance determined by EXAFS (2.29(2)-2.31(2) Å) is always comparable to that found in the HgCl2 crystal (2.31(2) Å), demonstrating that the HgCl2 molecule dissolves in these solvents without dissociating. A small sensitivity of EXAFS to the solvent molecules interacting with HgCl2 has been detected and indicates a high degree of configurational disorder associated with this contribution. XANES data analysis, which is less affected by the disorder, was therefore carried out for the first time on these systems to shed light into the still elusive structural arrangement of the solvent molecules around HgCl2. The obtained results show that, in aqueous and MeOH solutions, the XANES data are compatible with three solvent molecules arranged around the HgCl2 unit to form a trigonal bipyramidal structure. The determination of the three-body Cl-Hg-Cl distribution shows a certain degree of uncertainty around the average 180° bond angle value, suggesting that the HgCl2 molecule probably vibrates in the solution around a linear configuration.
In this work, we propose a method for the structural characterization of chemical reaction intermediates. It allows one to analyze time-resolved coupled energy dispersive X-ray absorption spectroscopy (EDXAS) and UV-Vis reaction data through a matricial approach. Concentration profiles for the reaction key species are derived from the UV-Vis data and are used as mathematical constraints to extract their associated X-ray absorption near edge structure (XANES) spectra. The obtained XANES spectra are then quantitatively characterized by full multiple scattering (MS) calculations. We demonstrate the capabilities of this approach by applying it over a series of coupled EDXAS/UV-Vis spectra acquired in the reaction between \(\mathrm{Fe}^{II}\)(tris(2-pyridylmethyl)amine) (\([\mathrm{Fe}^{II}(\mathrm{TPA})(\mathrm{CH}_3\mathrm{CN})_2]^{2+}\)) and \(\mathrm{H}_2\mathrm{O}_2\). As a result, structural information for the elusive reaction key intermediate \([\mathrm{Fe}^{III}\)(TPA)(OOH)(X)]\(^{2+}\) is derived and it is suggested that \(\mathrm{X}=\mathrm{CH}_3\mathrm{CN}\) in opposition to \(\mathrm{X}=\mathrm{H}_2\mathrm{O}\).
In this work, we propose a new method for the analysis of time-resolved X-ray absorption near edge structure (XANES) spectra. It allows to decompose an experimental dataset as the product of two matrices: a pure spectral matrix, composed by XANES spectra associable to well-defined chemical species/sites, and their related concentration profiles. This method combines the principal component analysis and the application of a transformation matrix whose elements are directly accessible by the user. We demonstrate the potential of this approach applying it to a series of XANES spectra acquired during the direct conversion of methane to methanol (DMTM) over a Cu-exchanged zeolite characterized by the ferrierite topology. Possibilities and limitations of this methodology are discussed together with a critical comparison with the Multivariate Curve Resolution Alternating Least Squares (MCR-ALS) algorithm that, in the field of X-ray absorption spectroscopy (XAS), is imposing itself as a widely used method for spectral decomposition.